Result of FASTA (omim) for
pFN21AE5059
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5059, 307 aa
1>>>pF1KE5059 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8754+/-0.000367; mu= 2.7237+/- 0.023
mean_var=403.1762+/-86.191, 0's: 0 Z-trim(124.8): 1482 B-trim: 178 in 1/56
Lambda= 0.063874
statistics sampled from 45306 (47319) to 45306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.555), width: 16
Scan time: 7.820
The best scores are: opt bits E(85289)
NP_112599 (OMIM: 605858) transcriptional repressor ( 348) 1069 111.9 1.9e-24
NP_003059 (OMIM: 172800,602150,608890) zinc finger ( 268) 605 68.9 1.2e-11
NP_840101 (OMIM: 612741) zinc finger protein SNAI3 ( 292) 578 66.5 7.3e-11
NP_005976 (OMIM: 604238) zinc finger protein SNAI1 ( 264) 519 61.0 3e-09
NP_003566 (OMIM: 603397) zinc finger protein 282 i ( 671) 451 55.3 3.9e-07
XP_006716214 (OMIM: 603397) PREDICTED: zinc finger ( 672) 451 55.3 3.9e-07
NP_001276331 (OMIM: 604077) zinc finger protein 13 ( 616) 417 52.1 3.3e-06
XP_016882731 (OMIM: 604077) PREDICTED: zinc finger ( 621) 417 52.1 3.3e-06
XP_016882730 (OMIM: 604077) PREDICTED: zinc finger ( 628) 417 52.1 3.3e-06
XP_016882729 (OMIM: 604077) PREDICTED: zinc finger ( 658) 417 52.2 3.4e-06
NP_001276330 (OMIM: 604077) zinc finger protein 13 ( 658) 417 52.2 3.4e-06
XP_006723426 (OMIM: 604077) PREDICTED: zinc finger ( 670) 417 52.2 3.4e-06
XP_005259268 (OMIM: 604077) PREDICTED: zinc finger ( 670) 417 52.2 3.4e-06
XP_006723425 (OMIM: 604077) PREDICTED: zinc finger ( 670) 417 52.2 3.4e-06
NP_003427 (OMIM: 604077) zinc finger protein 135 i ( 670) 417 52.2 3.4e-06
NP_009065 (OMIM: 604077) zinc finger protein 135 i ( 682) 417 52.2 3.5e-06
NP_001128127 (OMIM: 608387) zinc finger protein 21 ( 459) 412 51.5 3.8e-06
NP_004211 (OMIM: 608387) zinc finger protein 213 [ ( 459) 412 51.5 3.8e-06
NP_003442 (OMIM: 601276) zinc finger protein 177 i ( 321) 406 50.7 4.6e-06
NP_001278533 (OMIM: 194500) zinc finger protein 2 ( 345) 406 50.8 4.7e-06
NP_001017396 (OMIM: 194500) zinc finger protein 2 ( 383) 406 50.8 5e-06
NP_001269327 (OMIM: 194500) zinc finger protein 2 ( 387) 406 50.8 5.1e-06
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434) 407 51.0 5.1e-06
NP_001243583 (OMIM: 603972) zinc finger protein 43 ( 744) 411 51.7 5.3e-06
NP_001243580 (OMIM: 603972) zinc finger protein 43 ( 744) 411 51.7 5.3e-06
NP_066574 (OMIM: 194500) zinc finger protein 2 iso ( 425) 406 50.9 5.3e-06
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476) 407 51.1 5.3e-06
NP_001278534 (OMIM: 194500) zinc finger protein 2 ( 438) 406 50.9 5.4e-06
XP_016882701 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882704 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882702 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
NP_001243579 (OMIM: 603972) zinc finger protein 43 ( 803) 411 51.7 5.6e-06
XP_011526559 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
NP_001243577 (OMIM: 603972) zinc finger protein 43 ( 803) 411 51.7 5.6e-06
NP_001243578 (OMIM: 603972) zinc finger protein 43 ( 803) 411 51.7 5.6e-06
XP_016882699 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882696 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882700 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882698 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_011526561 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882705 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882697 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
XP_016882703 (OMIM: 603972) PREDICTED: zinc finger ( 803) 411 51.7 5.6e-06
NP_003414 (OMIM: 603972) zinc finger protein 43 is ( 809) 411 51.8 5.6e-06
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519) 407 51.1 5.6e-06
NP_001243582 (OMIM: 603972) zinc finger protein 43 ( 818) 411 51.8 5.6e-06
NP_001166122 (OMIM: 601276) zinc finger protein 17 ( 481) 406 51.0 5.7e-06
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 51.1 5.8e-06
XP_011526670 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 51.1 5.8e-06
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 51.1 5.8e-06
>>NP_112599 (OMIM: 605858) transcriptional repressor scr (348 aa)
initn: 1310 init1: 994 opt: 1069 Z-score: 559.8 bits: 111.9 E(85289): 1.9e-24
Smith-Waterman score: 1215; 58.5% identity (71.8% similar) in 347 aa overlap (5-305:5-341)
10 20 30 40 50
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGAR---GPP-GDNGYAPHRLPPSS-
:::::.: :.:. . ::.:: :: : : :.:: . :::
NP_112 MPRSFLVKKVKLDAFSSAD--------LESAY--GRARSDLGAPLHDKGYLSDYVGPSSV
10 20 30 40 50
60 70 80 90 100
pF1KE5 YDADQKPGLELAPA-EPAYPPAAPEEY-------SDPESPQSSLSAR---YFRGEAAVTD
::.: . .: .:. :: : :. : . : .:. :.. :. :.:::..
NP_112 YDGDAEAALLKGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSE
60 70 80 90 100 110
110 120 130 140
pF1KE5 SYSMDAFFISDGRSRRRRGGGG--------------GDAGGSGDAGG------AGGRAG-
.:. :::::.::::::. ...: :::::.: ::: :::.:
NP_112 GYAADAFFITDGRSRRKASNAGAAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGT
120 130 140 150 160 170
150 160 170 180 190
pF1KE5 RAGA---------QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKA
:::: ::.: ::::.::::::::::::::::::::::::::::.::::::.
NP_112 RAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKV
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE5 YVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSN
::::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_112 YVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSN
240 250 260 270 280 290
260 270 280 290 300
pF1KE5 LRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS
:::::::::::::..:..: :::::::::.:: :.:: :.. : .:: :
NP_112 LRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
300 310 320 330 340
>>NP_003059 (OMIM: 172800,602150,608890) zinc finger pro (268 aa)
initn: 810 init1: 582 opt: 605 Z-score: 329.8 bits: 68.9 E(85289): 1.2e-11
Smith-Waterman score: 614; 39.5% identity (59.9% similar) in 299 aa overlap (1-294:1-267)
10 20 30 40 50 60
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
::::::::: :. : :.: :.: :. . : ..:. .: :
NP_003 MPRSFLVKK----HFNAS--KKPNYSELDTHTVIIS---PYLYESYSMPVIP-------Q
10 20 30 40
70 80 90 100 110
pF1KE5 KPGLELAPAEP--AYPPAAPEEYSDPE--SPQSSLSARYFR-GEAAVTDSYSMDAFFISD
: . : .. ::: . . :. :: :. :. : . .:. : :
NP_003 PEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDH-----
50 60 70 80 90
120 130 140 150 160 170
pF1KE5 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQ
.:... : . .. . .: ... : :.:::.: :.:..:::
NP_003 ---------SGSESPISDEEERLQSKL--SDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQ
100 110 120 130 140
180 190 200 210 220 230
pF1KE5 THRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHT
: . .:. . .: : : :::. :: ::. ::.: : .::::::::::::::.:.::
NP_003 LHCDAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHT
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE5 GEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAA
:::::.: ::..:::::::::::.:::: :.:.:..:.:.:. : :::: :..: :
NP_003 GEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
210 220 230 240 250 260
300
pF1KE5 EPPPPTPAGPAS
>>NP_840101 (OMIM: 612741) zinc finger protein SNAI3 [Ho (292 aa)
initn: 610 init1: 498 opt: 578 Z-score: 316.0 bits: 66.5 E(85289): 7.3e-11
Smith-Waterman score: 589; 39.4% identity (59.3% similar) in 307 aa overlap (1-291:1-288)
10 20 30 40 50 60
pF1KE5 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
:::::::: :. .:.:. ::: . :: . : . .: : : . .: .
NP_840 MPRSFLVKT-------HSSHRVPNYRRLETQREINGACSACG-GLVVP--LLPRDKEAPS
10 20 30 40 50
70 80 90 100 110
pF1KE5 KPGLELAPAEPAYPPAAPEEYSDPESP--QSSLSARYFRG-EAAVTDSYSMDAFFI--SD
:: .: : .: .: : : : . .:.: . . :.. .: . : .. .:
NP_840 VPG-DL-P-QPWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD
60 70 80 90 100
120 130 140 150 160
pF1KE5 GRSR-----------RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTY
. .. : : : :. . .. : :: :: . : .: : :
NP_840 SLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRA----PGGFE--CFHCHKPY
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE5 ATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRP
: ..:.::.: : :. . : : : :.:. :: ::. ::.: : .::::::::
NP_840 HTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRP
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE5 WLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLH
::::::.:.::::::..:.::..:::::::::::.:::: :.::::.: :.:. : :
NP_840 WLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLA
230 240 250 260 270 280
290 300
pF1KE5 KHCEAACAKAAEPPPPTPAGPAS
.: :..:
NP_840 RHEESGCCPGP
290
>>NP_005976 (OMIM: 604238) zinc finger protein SNAI1 [Ho (264 aa)
initn: 669 init1: 467 opt: 519 Z-score: 287.1 bits: 61.0 E(85289): 3e-09
Smith-Waterman score: 519; 58.3% identity (82.6% similar) in 115 aa overlap (178-292:146-260)
150 160 170 180 190 200
pF1KE5 QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLT
..:... : .: :.: :.:. :: ::. .
NP_005 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
120 130 140 150 160 170
210 220 230 240 250 260
pF1KE5 HNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
:.: ::.::::::::::::::.:.:::::::.: ::..:::::::::::.:::: :.
NP_005 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
180 190 200 210 220 230
270 280 290 300
pF1KE5 YRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS
:.:. : ..:. : :::: :..:.
NP_005 YQCQACARTFSRMSLLHKHQESGCSGCPR
240 250 260
>>NP_003566 (OMIM: 603397) zinc finger protein 282 isofo (671 aa)
initn: 605 init1: 258 opt: 451 Z-score: 249.1 bits: 55.3 E(85289): 3.9e-07
Smith-Waterman score: 472; 33.2% identity (54.2% similar) in 286 aa overlap (40-300:404-668)
10 20 30 40 50 60
pF1KE5 IKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQKPGLELAPA
::. :. :: .: :. :
NP_003 PYPWGPRDSMDGELGLDSGPSDSLLMVKNPPPAPPQPQPQPQPP-------QPQLQSQPQ
380 390 400 410 420
70 80 90 100 110 120
pF1KE5 EPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRS----RRRRGGG
. :: : : .: .: : :: . :.... ..:.. : :::
NP_003 PQSLPPIAVAE--NPGGPPS-------RG--LLDDGFQVLPGERGSGEAPPGGDRSTGGG
430 440 450 460 470
130 140 150 160 170
pF1KE5 GGDAGGSGDAGGAG-GRAGRAGAQAGGGHR------------HACAECGKTYATSSNLSR
:::.::.: .. :: : .: :. :: : ..: ::::.... ..:
NP_003 GGDGGGGGGGAEAGTGAGGGCGSCCPGGLRRSLLLHGARSKPYSCPECGKSFGVRKSLII
480 490 500 510 520 530
180 190 200 210 220 230
pF1KE5 HKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGH
: ::: .. .: : :.. .: : .:: . .::. : :..:: ::.:
NP_003 H---HRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYKCSECEKTYSRKEHLQNH
540 550 560 570 580 590
240 250 260 270 280
pF1KE5 MRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSF----ALKSYLHKH
.: ::::.:: :: :::.: ..:: :.. :.. . : : .: ::: .::..:. :
NP_003 QRLHTGERPFQCALCGKSFIRKQNLLKHQRIHTGERPYTCGECGKSFRYKESLKDHLRVH
600 610 620 630 640 650
290 300
pF1KE5 CEAACAKAAE--PPPPTPAGPAS
. : . ::::
NP_003 SGGPGPGAPRQLPPPPERD
660 670
>>XP_006716214 (OMIM: 603397) PREDICTED: zinc finger pro (672 aa)
initn: 617 init1: 258 opt: 451 Z-score: 249.1 bits: 55.3 E(85289): 3.9e-07
Smith-Waterman score: 472; 33.2% identity (54.2% similar) in 286 aa overlap (40-300:405-669)
10 20 30 40 50 60
pF1KE5 IKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQKPGLELAPA
::. :. :: .: :. :
XP_006 PYPWGPRDSMDGELGLDSGPSDSLLMVKNPPPAPPQPQPQPQPP-------QPQLQSQPQ
380 390 400 410 420
70 80 90 100 110 120
pF1KE5 EPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRS----RRRRGGG
. :: : : .: .: : :: . :.... ..:.. : :::
XP_006 PQSLPPIAVAE--NPGGPPS-------RG--LLDDGFQVLPGERGSGEAPPGGDRSTGGG
430 440 450 460 470
130 140 150 160 170
pF1KE5 GGDAGGSGDAGGAG-GRAGRAGAQAGGGHR------------HACAECGKTYATSSNLSR
:::.::.: .. :: : .: :. :: : ..: ::::.... ..:
XP_006 GGDGGGGGGGAEAGTGAGGGCGSCCPGGLRRSLLLHGARSKPYSCPECGKSFGVRKSLII
480 490 500 510 520 530
180 190 200 210 220 230
pF1KE5 HKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGH
: ::: .. .: : :.. .: : .:: . .::. : :..:: ::.:
XP_006 H---HRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYKCSECEKTYSRKEHLQNH
540 550 560 570 580 590
240 250 260 270 280
pF1KE5 MRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSF----ALKSYLHKH
.: ::::.:: :: :::.: ..:: :.. :.. . : : .: ::: .::..:. :
XP_006 QRLHTGERPFQCALCGKSFIRKQNLLKHQRIHTGERPYTCGECGKSFRYKESLKDHLRVH
600 610 620 630 640 650
290 300
pF1KE5 CEAACAKAAE--PPPPTPAGPAS
. : . ::::
XP_006 SGGPGPGAPRQLPPPPERD
660 670
>>NP_001276331 (OMIM: 604077) zinc finger protein 135 is (616 aa)
initn: 1424 init1: 286 opt: 417 Z-score: 232.5 bits: 52.1 E(85289): 3.3e-06
Smith-Waterman score: 417; 42.0% identity (69.6% similar) in 138 aa overlap (151-286:308-442)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . :.::::... ::.:..:.. : .
NP_001 HTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG-
280 290 300 310 320 330
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::::.... : .: ::. . ..:: ::::::. :: : : :::::
NP_001 --EKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEK
340 350 360 370 380 390
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.: :: :.: ...: .:
NP_001 PYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYEC
400 410 420 430 440 450
300
pF1KE5 PPTPAGPAS
NP_001 NDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCG
460 470 480 490 500 510
>--
initn: 858 init1: 253 opt: 379 Z-score: 213.6 bits: 48.6 E(85289): 3.7e-05
Smith-Waterman score: 379; 37.7% identity (68.1% similar) in 138 aa overlap (151-286:448-582)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . : .:::... ::.:..:.. : .
NP_001 HTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG-
420 430 440 450 460 470
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::.:. .. : .: :. . ..:. ::.:::. :: :.: :: ::
NP_001 --EKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEK
480 490 500 510 520 530
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.:..: ::: ...: .:
NP_001 PYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYAC
540 550 560 570 580 590
300
pF1KE5 PPTPAGPAS
NP_001 RDCGKAFTHSSSLTKHQRTHTG
600 610
>--
initn: 455 init1: 237 opt: 344 Z-score: 196.2 bits: 45.4 E(85289): 0.00035
Smith-Waterman score: 344; 37.3% identity (66.4% similar) in 134 aa overlap (155-286:172-302)
130 140 150 160 170 180
pF1KE5 GGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQL
. : ::::... :: : .:..:: . .
NP_001 RQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQECGKAFSHSSALIEHHRTHTG---ER
150 160 170 180 190
190 200 210 220 230 240
pF1KE5 ARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: : :.. . ::. : :. . .:: ::..:.. : :.:.::::::. :
NP_001 PYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCGRTFNQIAPLIQHQRTHTGEKPYEC
200 210 220 230 240 250
250 260 270 280 290 300
pF1KE5 AHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTP
..:::.:. ::.. : .::.. : :.: .: :.: . .: .:
NP_001 SECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECG
260 270 280 290 300 310
pF1KE5 AGPAS
NP_001 KAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFS
320 330 340 350 360 370
>>XP_016882731 (OMIM: 604077) PREDICTED: zinc finger pro (621 aa)
initn: 1424 init1: 286 opt: 417 Z-score: 232.5 bits: 52.1 E(85289): 3.3e-06
Smith-Waterman score: 417; 42.0% identity (69.6% similar) in 138 aa overlap (151-286:313-447)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . :.::::... ::.:..:.. : .
XP_016 HTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG-
290 300 310 320 330 340
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::::.... : .: ::. . ..:: ::::::. :: : : :::::
XP_016 --EKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEK
350 360 370 380 390
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.: :: :.: ...: .:
XP_016 PYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYEC
400 410 420 430 440 450
300
pF1KE5 PPTPAGPAS
XP_016 NDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCG
460 470 480 490 500 510
>--
initn: 858 init1: 253 opt: 379 Z-score: 213.6 bits: 48.6 E(85289): 3.7e-05
Smith-Waterman score: 379; 37.7% identity (68.1% similar) in 138 aa overlap (151-286:453-587)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . : .:::... ::.:..:.. : .
XP_016 HTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG-
430 440 450 460 470 480
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::.:. .. : .: :. . ..:. ::.:::. :: :.: :: ::
XP_016 --EKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEK
490 500 510 520 530
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.:..: ::: ...: .:
XP_016 PYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYAC
540 550 560 570 580 590
300
pF1KE5 PPTPAGPAS
XP_016 RDCGKAFTHSSSLTKHQRTHTG
600 610 620
>--
initn: 455 init1: 237 opt: 344 Z-score: 196.1 bits: 45.4 E(85289): 0.00035
Smith-Waterman score: 344; 37.3% identity (66.4% similar) in 134 aa overlap (155-286:177-307)
130 140 150 160 170 180
pF1KE5 GGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQL
. : ::::... :: : .:..:: . .
XP_016 RQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQECGKAFSHSSALIEHHRTHTG---ER
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE5 ARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: : :.. . ::. : :. . .:: ::..:.. : :.:.::::::. :
XP_016 PYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCGRTFNQIAPLIQHQRTHTGEKPYEC
210 220 230 240 250 260
250 260 270 280 290 300
pF1KE5 AHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTP
..:::.:. ::.. : .::.. : :.: .: :.: . .: .:
XP_016 SECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECG
270 280 290 300 310 320
pF1KE5 AGPAS
XP_016 KAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFS
330 340 350 360 370 380
>>XP_016882730 (OMIM: 604077) PREDICTED: zinc finger pro (628 aa)
initn: 1201 init1: 286 opt: 417 Z-score: 232.4 bits: 52.1 E(85289): 3.3e-06
Smith-Waterman score: 417; 42.0% identity (69.6% similar) in 138 aa overlap (151-286:320-454)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . :.::::... ::.:..:.. : .
XP_016 HTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG-
290 300 310 320 330 340
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::::.... : .: ::. . ..:: ::::::. :: : : :::::
XP_016 --EKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEK
350 360 370 380 390 400
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.: :: :.: ...: .:
XP_016 PYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYEC
410 420 430 440 450 460
300
pF1KE5 PPTPAGPAS
XP_016 NDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCG
470 480 490 500 510 520
>--
initn: 858 init1: 253 opt: 379 Z-score: 213.5 bits: 48.6 E(85289): 3.7e-05
Smith-Waterman score: 379; 37.7% identity (68.1% similar) in 138 aa overlap (151-286:460-594)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . : .:::... ::.:..:.. : .
XP_016 HTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG-
430 440 450 460 470 480
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::.:. .. : .: :. . ..:. ::.:::. :: :.: :: ::
XP_016 --EKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEK
490 500 510 520 530 540
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.:..: ::: ...: .:
XP_016 PYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYAC
550 560 570 580 590 600
300
pF1KE5 PPTPAGPAS
XP_016 RDCGKAFTHSSSLTKHQRTHTG
610 620
>--
initn: 455 init1: 237 opt: 344 Z-score: 196.1 bits: 45.4 E(85289): 0.00035
Smith-Waterman score: 344; 37.3% identity (66.4% similar) in 134 aa overlap (155-286:184-314)
130 140 150 160 170 180
pF1KE5 GGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQL
. : ::::... :: : .:..:: . .
XP_016 RQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQECGKAFSHSSALIEHHRTHTG---ER
160 170 180 190 200 210
190 200 210 220 230 240
pF1KE5 ARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: : :.. . ::. : :. . .:: ::..:.. : :.:.::::::. :
XP_016 PYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCGRTFNQIAPLIQHQRTHTGEKPYEC
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE5 AHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTP
..:::.:. ::.. : .::.. : :.: .: :.: . .: .:
XP_016 SECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECG
280 290 300 310 320 330
pF1KE5 AGPAS
XP_016 KAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFS
340 350 360 370 380 390
>>XP_016882729 (OMIM: 604077) PREDICTED: zinc finger pro (658 aa)
initn: 1424 init1: 286 opt: 417 Z-score: 232.2 bits: 52.2 E(85289): 3.4e-06
Smith-Waterman score: 417; 42.0% identity (69.6% similar) in 138 aa overlap (151-286:350-484)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . :.::::... ::.:..:.. : .
XP_016 HTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG-
320 330 340 350 360 370
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::::.... : .: ::. . ..:: ::::::. :: : : :::::
XP_016 --EKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEK
380 390 400 410 420 430
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.: :: :.: ...: .:
XP_016 PYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYEC
440 450 460 470 480 490
300
pF1KE5 PPTPAGPAS
XP_016 NDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCG
500 510 520 530 540 550
>--
initn: 858 init1: 253 opt: 379 Z-score: 213.3 bits: 48.7 E(85289): 3.8e-05
Smith-Waterman score: 379; 37.7% identity (68.1% similar) in 138 aa overlap (151-286:490-624)
130 140 150 160 170 180
pF1KE5 RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
: . . : .:::... ::.:..:.. : .
XP_016 HTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG-
460 470 480 490 500 510
190 200 210 220 230
pF1KE5 DSQLARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEK
. .: ::.:. .. : .: :. . ..:. ::.:::. :: :.: :: ::
XP_016 --EKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEK
520 530 540 550 560 570
240 250 260 270 280 290
pF1KE5 PFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPP
:.:: .:::.:. :.: : .::.. : :.:..: ::: ...: .:
XP_016 PYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYAC
580 590 600 610 620 630
300
pF1KE5 PPTPAGPAS
XP_016 RDCGKAFTHSSSLTKHQRTHTG
640 650
>--
initn: 455 init1: 237 opt: 344 Z-score: 195.9 bits: 45.4 E(85289): 0.00036
Smith-Waterman score: 344; 37.3% identity (66.4% similar) in 134 aa overlap (155-286:214-344)
130 140 150 160 170 180
pF1KE5 GGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQL
. : ::::... :: : .:..:: . .
XP_016 RQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQECGKAFSHSSALIEHHRTHTG---ER
190 200 210 220 230 240
190 200 210 220 230 240
pF1KE5 ARKCPTCGKAYVSMPALAMHLLTHNLR--HKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: : :.. . ::. : :. . .:: ::..:.. : :.:.::::::. :
XP_016 PYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCGRTFNQIAPLIQHQRTHTGEKPYEC
250 260 270 280 290 300
250 260 270 280 290 300
pF1KE5 AHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTP
..:::.:. ::.. : .::.. : :.: .: :.: . .: .:
XP_016 SECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECG
310 320 330 340 350 360
pF1KE5 AGPAS
XP_016 KAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFS
370 380 390 400 410 420
307 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:37:52 2016 done: Tue Nov 8 04:37:53 2016
Total Scan time: 7.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]