FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3224, 510 aa 1>>>pF1KE3224 510 - 510 aa - 510 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7015+/-0.000826; mu= 11.1062+/- 0.050 mean_var=214.4012+/-42.500, 0's: 0 Z-trim(115.3): 21 B-trim: 8 in 1/53 Lambda= 0.087591 statistics sampled from 15867 (15887) to 15867 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.488), width: 16 Scan time: 3.850 The best scores are: opt bits E(32554) CCDS13000.2 RBCK1 gene_id:10616|Hs108|chr20 ( 510) 3657 474.5 1.2e-133 CCDS12998.1 RBCK1 gene_id:10616|Hs108|chr20 ( 468) 3307 430.2 2.4e-120 CCDS82588.1 RBCK1 gene_id:10616|Hs108|chr20 ( 340) 1542 207.1 2.6e-53 >>CCDS13000.2 RBCK1 gene_id:10616|Hs108|chr20 (510 aa) initn: 3657 init1: 3657 opt: 3657 Z-score: 2512.8 bits: 474.5 E(32554): 1.2e-133 Smith-Waterman score: 3657; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510) 10 20 30 40 50 60 pF1KE3 MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 AGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 AENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPR 430 440 450 460 470 480 490 500 510 pF1KE3 WGPGGPGDTSGGCRCRVNGIPCHPSCQNCH :::::::::::::::::::::::::::::: CCDS13 WGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 490 500 510 >>CCDS12998.1 RBCK1 gene_id:10616|Hs108|chr20 (468 aa) initn: 3305 init1: 3305 opt: 3307 Z-score: 2274.2 bits: 430.2 E(32554): 2.4e-120 Smith-Waterman score: 3307; 98.5% identity (98.9% similar) in 464 aa overlap (47-510:6-468) 20 30 40 50 60 70 pF1KE3 RAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVR :. :. ::::::::::::::::::::: CCDS12 MGTATPDGREDQE-RLWVSVEDAQMHTVTIWLTVR 10 20 30 80 90 100 110 120 130 pF1KE3 PDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSARNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSARNT 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVG 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE3 WQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQRKQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQRKQQ 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE3 QQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNS 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE3 QEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDC 280 290 300 310 320 330 380 390 400 410 420 430 pF1KE3 KGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLK 340 350 360 370 380 390 440 450 460 470 480 490 pF1KE3 VMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCR 400 410 420 430 440 450 500 510 pF1KE3 VNGIPCHPSCQNCH :::::::::::::: CCDS12 VNGIPCHPSCQNCH 460 >>CCDS82588.1 RBCK1 gene_id:10616|Hs108|chr20 (340 aa) initn: 1530 init1: 1530 opt: 1542 Z-score: 1070.5 bits: 207.1 E(32554): 2.6e-53 Smith-Waterman score: 1542; 97.7% identity (98.6% similar) in 213 aa overlap (298-510:129-340) 270 280 290 300 310 320 pF1KE3 LDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFID :.:. : :::::::::::::::::::::: CCDS82 CAAGRAPRPTRSPPHTSPTRRSERAWRARRRRCVST-SRECLQGTIRNSQEAEVSCPFID 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE3 NTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 NTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVN 160 170 180 190 200 210 390 400 410 420 430 440 pF1KE3 EFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRC 220 230 240 250 260 270 450 460 470 480 490 500 pF1KE3 PQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 280 290 300 310 320 330 510 pF1KE3 NCH ::: CCDS82 NCH 340 510 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:10:44 2016 done: Sun Nov 6 13:10:44 2016 Total Scan time: 3.850 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]