FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6388, 301 aa
  1>>>pF1KB6388 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7142+/-0.000749; mu= 10.5610+/- 0.045
 mean_var=114.5001+/-22.812, 0's: 0 Z-trim(111.9): 7  B-trim: 0 in 0/55
 Lambda= 0.119859
 statistics sampled from 12760 (12764) to 12760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.392), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS12772.1 NOSIP gene_id:51070|Hs108|chr19        ( 301) 2015 358.6 3.2e-99


>>CCDS12772.1 NOSIP gene_id:51070|Hs108|chr19             (301 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 1894.7  bits: 358.6 E(32554): 3.2e-99
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KB6 MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DGYLYEREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGYLYEREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RTVTCPMSGKPLRMSDLTPVHFTPLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTVTCPMSGKPLRMSDLTPVHFTPLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSGVKLQAEKSRPVMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSGVKLQAEKSRPVMQ
              250       260       270       280       290       300

        
pF1KB6 A
       :
CCDS12 A
        




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:52:50 2016 done: Mon Nov  7 20:52:50 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]