FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1725, 235 aa 1>>>pF1KE1725 235 - 235 aa - 235 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3328+/-0.000607; mu= 11.8313+/- 0.037 mean_var=114.5956+/-22.866, 0's: 0 Z-trim(116.6): 4 B-trim: 1004 in 1/51 Lambda= 0.119809 statistics sampled from 17208 (17211) to 17208 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.529), width: 16 Scan time: 1.710 The best scores are: opt bits E(32554) CCDS12767.1 FLT3LG gene_id:2323|Hs108|chr19 ( 235) 1613 288.3 3e-78 CCDS62753.1 FLT3LG gene_id:2323|Hs108|chr19 ( 153) 1066 193.6 6.2e-50 >>CCDS12767.1 FLT3LG gene_id:2323|Hs108|chr19 (235 aa) initn: 1613 init1: 1613 opt: 1613 Z-score: 1518.4 bits: 288.3 E(32554): 3e-78 Smith-Waterman score: 1613; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235) 10 20 30 40 50 60 pF1KE1 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH 190 200 210 220 230 >>CCDS62753.1 FLT3LG gene_id:2323|Hs108|chr19 (153 aa) initn: 1066 init1: 1066 opt: 1066 Z-score: 1010.0 bits: 193.6 E(32554): 6.2e-50 Smith-Waterman score: 1066; 100.0% identity (100.0% similar) in 153 aa overlap (83-235:1-153) 60 70 80 90 100 110 pF1KE1 LQDYPVTVASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCA :::::::::::::::::::::::::::::: CCDS62 MERLKTVAGSKMQGLLERVNTEIHFVTKCA 10 20 30 120 130 140 150 160 170 pF1KE1 FQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 FQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPR 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 PLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 PLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLL 100 110 120 130 140 150 pF1KE1 VEH ::: CCDS62 VEH 235 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:57:59 2016 done: Mon Nov 7 22:57:59 2016 Total Scan time: 1.710 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]