FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2647, 492 aa 1>>>pF1KE2647 492 - 492 aa - 492 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3428+/-0.000405; mu= 8.7995+/- 0.026 mean_var=311.3290+/-65.812, 0's: 0 Z-trim(121.7): 75 B-trim: 983 in 1/58 Lambda= 0.072688 statistics sampled from 38638 (38726) to 38638 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.454), width: 16 Scan time: 11.580 The best scores are: opt bits E(85289) NP_002507 (OMIM: 601991) RNA-binding protein Nova- ( 492) 3120 340.7 5.7e-93 XP_016882328 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71 XP_016882329 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71 XP_016882327 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71 XP_006723293 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71 NP_006480 (OMIM: 602157) RNA-binding protein Nova- ( 483) 1735 195.4 3e-49 XP_016876832 (OMIM: 602157) PREDICTED: RNA-binding ( 446) 1609 182.2 2.7e-45 NP_002506 (OMIM: 602157) RNA-binding protein Nova- ( 507) 1281 147.9 6.6e-35 XP_016876838 (OMIM: 602157) PREDICTED: RNA-binding ( 361) 1147 133.6 9.1e-31 XP_011535102 (OMIM: 602157) PREDICTED: RNA-binding ( 361) 1147 133.6 9.1e-31 XP_016876836 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28 XP_016876835 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28 XP_016876833 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28 XP_016876837 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28 XP_016876834 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28 XP_016876831 (OMIM: 602157) PREDICTED: RNA-binding ( 470) 1063 125.0 4.8e-28 NP_006482 (OMIM: 602157) RNA-binding protein Nova- ( 181) 717 88.1 2.2e-17 XP_016858233 (OMIM: 603444) PREDICTED: far upstrea ( 643) 293 44.4 0.0012 NP_003893 (OMIM: 603444) far upstream element-bind ( 644) 293 44.4 0.0012 XP_016858232 (OMIM: 603444) PREDICTED: far upstrea ( 653) 293 44.4 0.0012 XP_016858231 (OMIM: 603444) PREDICTED: far upstrea ( 664) 293 44.4 0.0012 NP_001290362 (OMIM: 603444) far upstream element-b ( 665) 293 44.4 0.0012 XP_016858230 (OMIM: 603444) PREDICTED: far upstrea ( 666) 293 44.4 0.0012 XP_011540695 (OMIM: 603444) PREDICTED: far upstrea ( 667) 293 44.4 0.0012 XP_016858229 (OMIM: 603444) PREDICTED: far upstrea ( 675) 293 44.4 0.0012 XP_011540694 (OMIM: 603444) PREDICTED: far upstrea ( 687) 293 44.4 0.0012 XP_016858228 (OMIM: 603444) PREDICTED: far upstrea ( 688) 293 44.4 0.0012 XP_011540693 (OMIM: 603444) PREDICTED: far upstrea ( 688) 293 44.4 0.0012 >>NP_002507 (OMIM: 601991) RNA-binding protein Nova-2 [H (492 aa) initn: 3120 init1: 3120 opt: 3120 Z-score: 1790.1 bits: 340.7 E(85289): 5.7e-93 Smith-Waterman score: 3120; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492) 10 20 30 40 50 60 pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 AANGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AANGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 430 440 450 460 470 480 490 pF1KE2 QGVRASNPQKVG :::::::::::: NP_002 QGVRASNPQKVG 490 >>XP_016882328 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71 Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383) 80 90 100 110 120 130 pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN :::::::::::::::::::::::::::::: XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN 10 20 30 140 150 160 170 180 190 pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG 340 350 360 370 380 >>XP_016882329 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71 Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383) 80 90 100 110 120 130 pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN :::::::::::::::::::::::::::::: XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN 10 20 30 140 150 160 170 180 190 pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG 340 350 360 370 380 >>XP_016882327 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71 Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383) 80 90 100 110 120 130 pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN :::::::::::::::::::::::::::::: XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN 10 20 30 140 150 160 170 180 190 pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG 340 350 360 370 380 >>XP_006723293 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71 Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383) 80 90 100 110 120 130 pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN :::::::::::::::::::::::::::::: XP_006 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN 10 20 30 140 150 160 170 180 190 pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG 340 350 360 370 380 >>NP_006480 (OMIM: 602157) RNA-binding protein Nova-1 is (483 aa) initn: 1959 init1: 1341 opt: 1735 Z-score: 1005.3 bits: 195.4 E(85289): 3e-49 Smith-Waterman score: 2245; 75.2% identity (89.4% similar) in 492 aa overlap (4-492:21-483) 10 20 30 40 pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYA . :::::::::.:::. :::.::::.:.::::::::::: NP_006 MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV :::::::::::::::::::::::::::::::::::::::::.:::.:::::::.:::::. NP_006 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKI 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 REIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAW ::.:: ..: : :.:::::::.:::: ::.:.:::::::::::::::::::::::::::: NP_006 REMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAW 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE2 VQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVAN :::::::.::::::::::::::::: .::: :.::.::::::.::::::::::.::::: NP_006 VQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVAN 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE2 SNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTAL :::::::::. :.::: .::::.:::: :.::::.::::.: .:.:.::.::..:: NP_006 SNPTGSPYANTAEVLP-----TAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSAL 250 260 270 280 290 290 300 310 320 330 340 pF1KE2 NTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGG ::::::::: :.:::::..:::.:.:::.::.:::::::: ::::.::.::.:. ::: NP_006 NTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAA-NLLATYASEASASGSTAGG 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE2 AAPPPPPPPGALGSFALAAAA-NGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKL .: ::::.: :.:: :::.::.. ::.:.: .: .:: NP_006 TAGTF-----ALGSLAAATAATNGYFGAAS---------PLAASA--------ILGTEK- 360 370 380 390 410 420 430 440 450 460 pF1KE2 AAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT .....:..::::::::::::::::::::::::::::::::::::::::.::::::.:::: NP_006 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 400 410 420 430 440 450 470 480 490 pF1KE2 GSPAATQAAQYLISQRVTYEQGVRASNPQKVG :.:::::::::::.::.::::::::.:::::: NP_006 GTPAATQAAQYLITQRITYEQGVRAANPQKVG 460 470 480 >>XP_016876832 (OMIM: 602157) PREDICTED: RNA-binding pro (446 aa) initn: 1833 init1: 1215 opt: 1609 Z-score: 934.2 bits: 182.2 E(85289): 2.7e-45 Smith-Waterman score: 2119; 75.4% identity (89.5% similar) in 467 aa overlap (29-492:9-446) 10 20 30 40 50 60 pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK :.:.:::::::::::::::::::::::::::: XP_016 MHPMHRSREDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 10 20 30 40 70 80 90 100 110 120 pF1KE2 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ ::::::::::::::::::::::::.:::.:::::::.:::::.::.:: ..: : :.::: XP_016 ETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQ 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV ::::.:::: ::.:.:::::::::::::::::::::::::::::::::::.::::::::: XP_016 PQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVV 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE2 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA :::::::: .::: :.::.::::::.::::::::::.::::::::::::::. :.::: XP_016 TVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP- 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL .::::.:::: :.::::.::::.: .:.:.::.::..::::::::::: :.::::: XP_016 ----TAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGL 220 230 240 250 260 270 310 320 330 340 350 pF1KE2 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFAL ..:::.:.:::.::.:::::::: ::::.::.::.:. :::.: ::::.: XP_016 SQAAATGALAAAAASANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAA 280 290 300 310 320 360 370 380 390 400 410 pF1KE2 AAAA-NGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENL :.:: :::.::.. ::.:.: .: .:: .....:..::::::::: XP_016 ATAATNGYFGAAS---------PLAASA--------ILGTEK-STDGSKDVVEIAVPENL 330 340 350 360 370 420 430 440 450 460 470 pF1KE2 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV :::::::::::::::::::::::::::::::.::::::.:::::.:::::::::::.::. XP_016 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 380 390 400 410 420 430 480 490 pF1KE2 TYEQGVRASNPQKVG ::::::::.:::::: XP_016 TYEQGVRAANPQKVG 440 >>NP_002506 (OMIM: 602157) RNA-binding protein Nova-1 is (507 aa) initn: 1573 init1: 715 opt: 1281 Z-score: 747.7 bits: 147.9 E(85289): 6.6e-35 Smith-Waterman score: 2187; 71.7% identity (85.3% similar) in 516 aa overlap (4-492:21-507) 10 20 30 40 pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYA . :::::::::.:::. :::.::::.:.::::::::::: NP_002 MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV :::::::::::::::::::::::::::::::::::::::::.:::.:::::::.:::::. NP_002 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKI 70 80 90 100 110 120 110 120 130 pF1KE2 REIPQAMTKPEVVNILQPQTTMNPDRAKQA------------------------KLIVPN ::.:: ..: : :.:::::::.:::: ::. :.:::: NP_002 REMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPN 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK :::::::::::::::::::::::::::::::.::::::::::::::::: .::: :.:: NP_002 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA .::::::.::::::::::.::::::::::::::. :.::: .::::.:::: :.:: NP_002 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGHANLA 250 260 270 280 290 260 270 280 290 300 310 pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA ::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::.:::: NP_002 GVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPA 300 310 320 330 340 350 320 330 340 350 360 370 pF1KE2 AAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGGGAGG :::: ::::.::.::.:. :::.: ::::.: :.:: :::.::.. NP_002 AAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS------ 360 370 380 390 400 380 390 400 410 420 430 pF1KE2 GGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELT ::.:.: .: .:: .....:..:::::::::::::::::::::::::::: NP_002 ---PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELT 410 420 430 440 450 440 450 460 470 480 490 pF1KE2 GARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::.::::::.:::::.:::::::::::.::.::::::::.:::::: NP_002 GARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG 460 470 480 490 500 >>XP_016876838 (OMIM: 602157) PREDICTED: RNA-binding pro (361 aa) initn: 1371 init1: 753 opt: 1147 Z-score: 673.4 bits: 133.6 E(85289): 9.1e-31 Smith-Waterman score: 1657; 72.1% identity (87.4% similar) in 390 aa overlap (106-492:1-361) 80 90 100 110 120 130 pF1KE2 PGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKL .:: ..: : :.:::::::.:::: ::.:. XP_016 MPQNVAKTEPVSILQPQTTVNPDRIKQVKI 10 20 30 140 150 160 170 180 190 pF1KE2 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSA :::::::::::::::::::::::::::::::::::.::::::::::::::::: .::: XP_016 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVEL 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP :.::.::::::.::::::::::.::::::::::::::. :.::: .::::.:::: XP_016 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGH 100 110 120 130 140 260 270 280 290 300 310 pF1KE2 AGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAG :.::::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::. XP_016 ANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAAS 150 160 170 180 190 200 320 330 340 350 360 370 pF1KE2 ANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGG :::::::: ::::.::.::.:. :::.: ::::.: :.:: :::.::.. XP_016 ANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS-- 210 220 230 240 250 380 390 400 410 420 430 pF1KE2 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY ::.:.: .: .:: .....:..:::::::::::::::::::::::: XP_016 -------PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEY 260 270 280 290 300 440 450 460 470 480 490 pF1KE2 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::.::::::.:::::.:::::::::::.::.::::::::.:::::: XP_016 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG 310 320 330 340 350 360 >>XP_011535102 (OMIM: 602157) PREDICTED: RNA-binding pro (361 aa) initn: 1371 init1: 753 opt: 1147 Z-score: 673.4 bits: 133.6 E(85289): 9.1e-31 Smith-Waterman score: 1657; 72.1% identity (87.4% similar) in 390 aa overlap (106-492:1-361) 80 90 100 110 120 130 pF1KE2 PGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKL .:: ..: : :.:::::::.:::: ::.:. XP_011 MPQNVAKTEPVSILQPQTTVNPDRIKQVKI 10 20 30 140 150 160 170 180 190 pF1KE2 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSA :::::::::::::::::::::::::::::::::::.::::::::::::::::: .::: XP_011 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVEL 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP :.::.::::::.::::::::::.::::::::::::::. :.::: .::::.:::: XP_011 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGH 100 110 120 130 140 260 270 280 290 300 310 pF1KE2 AGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAG :.::::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::. XP_011 ANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAAS 150 160 170 180 190 200 320 330 340 350 360 370 pF1KE2 ANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGG :::::::: ::::.::.::.:. :::.: ::::.: :.:: :::.::.. XP_011 ANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS-- 210 220 230 240 250 380 390 400 410 420 430 pF1KE2 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY ::.:.: .: .:: .....:..:::::::::::::::::::::::: XP_011 -------PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEY 260 270 280 290 300 440 450 460 470 480 490 pF1KE2 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG ::::::::::::::::.::::::.:::::.:::::::::::.::.::::::::.:::::: XP_011 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG 310 320 330 340 350 360 492 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 11 17:00:52 2016 done: Fri Nov 11 17:00:54 2016 Total Scan time: 11.580 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]