FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5416, 346 aa
  1>>>pF1KE5416 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6864+/-0.000799; mu= 7.7162+/- 0.049
 mean_var=177.2076+/-35.488, 0's: 0 Z-trim(114.0): 8  B-trim: 0 in 0/54
 Lambda= 0.096346
 statistics sampled from 14597 (14605) to 14597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS12620.1 LYPD3 gene_id:27076|Hs108|chr19        ( 346) 2397 344.7 6.6e-95


>>CCDS12620.1 LYPD3 gene_id:27076|Hs108|chr19             (346 aa)
 initn: 2397 init1: 2397 opt: 2397  Z-score: 1817.3  bits: 344.7 E(32554): 6.6e-95
Smith-Waterman score: 2397; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE5 MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRIPPLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRIPPLVR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGA
              250       260       270       280       290       300

              310       320       330       340      
pF1KE5 AGHQDRSNSGQYPAKGGPQQPHNKGCVAPTAGLAALLLAVAAGVLL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGHQDRSNSGQYPAKGGPQQPHNKGCVAPTAGLAALLLAVAAGVLL
              310       320       330       340      




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:22:10 2016 done: Sun Nov  6 14:22:11 2016
 Total Scan time:  2.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]