FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1666, 185 aa 1>>>pF1KE1666 185 - 185 aa - 185 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0780+/-0.000371; mu= 13.9162+/- 0.023 mean_var=60.0205+/-11.794, 0's: 0 Z-trim(113.8): 20 B-trim: 0 in 0/48 Lambda= 0.165548 statistics sampled from 23257 (23274) to 23257 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.273), width: 16 Scan time: 5.740 The best scores are: opt bits E(85289) NP_006414 (OMIM: 604925) prenylated Rab acceptor p ( 185) 1230 301.9 3.9e-82 NP_006398 (OMIM: 605709) PRA1 family protein 3 [Ho ( 188) 135 40.4 0.0021 NP_009144 (OMIM: 300840) PRA1 family protein 2 [Ho ( 178) 134 40.1 0.0024 >>NP_006414 (OMIM: 604925) prenylated Rab acceptor prote (185 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1595.6 bits: 301.9 E(85289): 3.9e-82 Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE1 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL 130 140 150 160 170 180 pF1KE1 QMEPV ::::: NP_006 QMEPV >>NP_006398 (OMIM: 605709) PRA1 family protein 3 [Homo s (188 aa) initn: 123 init1: 78 opt: 135 Z-score: 182.1 bits: 40.4 E(85289): 0.0021 Smith-Waterman score: 135; 23.7% identity (58.6% similar) in 152 aa overlap (40-185:6-155) 10 20 30 40 50 60 pF1KE1 DAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVD-QQRFSRP--RNLGELCQR : .: :. : ..::.:: :.... .: NP_006 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNR 10 20 30 70 80 90 100 110 120 pF1KE1 LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREV .: :. :::.::. : .: ::. .. .. . .. . ..: :: :.. NP_006 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVL--RRM 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 SPAHQYALAGGISFP-FFWLAGAGSAVFWVLGAT--LVVIGSHAAFHQIEAVDGEELQME . . ... . . .: .. :... .:.: : :... ::... . . : .:: NP_006 KKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME 100 110 120 130 140 150 pF1KE1 PV . NP_006 GIGLKRTPMGIVLDALEQQEEGINRLTDYISKVKE 160 170 180 >>NP_009144 (OMIM: 300840) PRA1 family protein 2 [Homo s (178 aa) initn: 132 init1: 56 opt: 134 Z-score: 181.2 bits: 40.1 E(85289): 0.0024 Smith-Waterman score: 134; 27.9% identity (56.4% similar) in 140 aa overlap (36-169:3-140) 10 20 30 40 50 60 pF1KE1 DQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFV-DQQRFSRPR--NLGE : : .: . :: . :.. : . . NP_009 MSEVRLPPLRALDDFVLGSARLAAPDPCDPQR 10 20 30 70 80 90 100 110 pF1KE1 LCQRLVRNVEYYQSNYVFVF-LGLILYCVVTSPM--LLVALAVFFGACYILYLRTLESKL :.:.. :. :::.::.. : .:: : : :. :: ::.: : .: . NP_009 WCHRVINNLLYYQTNYLLCFGIGLALAGYVR-PLHTLLSALVVAV-ALGVLVWAAETRAA 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 VLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEE : :. :: : . .... .:.::.. . .. ... ...: ::.. NP_009 VRRCRRSHPAACLAAVLAVGLLVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIE 100 110 120 130 140 150 180 pF1KE1 LQMEPV NP_009 NKIESIGLKRTPMGLLLEALGQEQEAGS 160 170 185 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:21:49 2016 done: Sun Nov 6 13:21:50 2016 Total Scan time: 5.740 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]