FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1666, 185 aa 1>>>pF1KE1666 185 - 185 aa - 185 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9897+/-0.000793; mu= 14.4583+/- 0.047 mean_var=58.8568+/-11.928, 0's: 0 Z-trim(107.3): 15 B-trim: 50 in 1/48 Lambda= 0.167177 statistics sampled from 9478 (9488) to 9478 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.291), width: 16 Scan time: 1.700 The best scores are: opt bits E(32554) CCDS12593.1 RABAC1 gene_id:10567|Hs108|chr19 ( 185) 1230 304.6 2.3e-83 >>CCDS12593.1 RABAC1 gene_id:10567|Hs108|chr19 (185 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1610.1 bits: 304.6 E(32554): 2.3e-83 Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE1 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL 130 140 150 160 170 180 pF1KE1 QMEPV ::::: CCDS12 QMEPV 185 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:21:48 2016 done: Sun Nov 6 13:21:48 2016 Total Scan time: 1.700 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]