FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6640, 226 aa 1>>>pF1KE6640 226 - 226 aa - 226 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1592+/-0.000279; mu= 14.9246+/- 0.017 mean_var=79.4808+/-16.077, 0's: 0 Z-trim(119.8): 116 B-trim: 19 in 2/60 Lambda= 0.143861 statistics sampled from 34130 (34264) to 34130 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.402), width: 16 Scan time: 6.220 The best scores are: opt bits E(85289) NP_001774 (OMIM: 112205,613501) B-cell antigen rec ( 226) 1589 338.7 4.9e-93 NP_067612 (OMIM: 112205,613501) B-cell antigen rec ( 188) 685 151.0 1.3e-36 NP_000617 (OMIM: 147245,612692) B-cell antigen rec ( 229) 171 44.4 0.00019 NP_001035022 (OMIM: 147245,612692) B-cell antigen ( 230) 171 44.4 0.00019 >>NP_001774 (OMIM: 112205,613501) B-cell antigen recepto (226 aa) initn: 1589 init1: 1589 opt: 1589 Z-score: 1791.4 bits: 338.7 E(85289): 4.9e-93 Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226) 10 20 30 40 50 60 pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD 130 140 150 160 170 180 190 200 210 220 pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP :::::::::::::::::::::::::::::::::::::::::::::: NP_001 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP 190 200 210 220 >>NP_067612 (OMIM: 112205,613501) B-cell antigen recepto (188 aa) initn: 1312 init1: 679 opt: 685 Z-score: 778.4 bits: 151.0 E(85289): 1.3e-36 Smith-Waterman score: 1240; 82.7% identity (83.2% similar) in 226 aa overlap (1-226:1-188) 10 20 30 40 50 60 pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG :::::::::::::::::::::::::::: NP_067 NANVTWWRVLHGNYTWPPEFLGPGEDPN-------------------------------- 70 80 130 140 150 160 170 180 pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD .::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 ------EPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD 90 100 110 120 130 140 190 200 210 220 pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP :::::::::::::::::::::::::::::::::::::::::::::: NP_067 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP 150 160 170 180 >>NP_000617 (OMIM: 147245,612692) B-cell antigen recepto (229 aa) initn: 237 init1: 75 opt: 171 Z-score: 200.7 bits: 44.4 E(85289): 0.00019 Smith-Waterman score: 208; 29.7% identity (55.7% similar) in 185 aa overlap (27-202:40-210) 10 20 30 40 50 pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPH : .:. .: . : . . : ....: NP_000 PSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIW--QSPRFIARKRGFTVKMHCYM 10 20 30 40 50 60 60 70 80 90 100 pF1KE6 NSSNNANVTW-WRVLHGNYTWPPEF-LGPG---EDPN---GTLIIQNVNKSHGGIYVCRV ::... ::.: :. . : .. : : :. : .:: ::.. .::: :. NP_000 NSASG-NVSWLWKQEMDEN--PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 QEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRK . .: : :.::: ::: : . . :. :: . ..... .:: ::: . NP_000 KCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDK- 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 RWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP .. : :. :... ::::..:. . :::: NP_000 --DDSKAGM------EEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 190 200 210 220 >>NP_001035022 (OMIM: 147245,612692) B-cell antigen rece (230 aa) initn: 237 init1: 75 opt: 171 Z-score: 200.7 bits: 44.4 E(85289): 0.00019 Smith-Waterman score: 208; 29.7% identity (55.7% similar) in 185 aa overlap (27-202:41-211) 10 20 30 40 50 pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPH : .:. .: . : . . : ....: NP_001 SHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIW--QSPRFIARKRGFTVKMHCYM 20 30 40 50 60 60 70 80 90 100 pF1KE6 NSSNNANVTW-WRVLHGNYTWPPEF-LGPG---EDPN---GTLIIQNVNKSHGGIYVCRV ::... ::.: :. . : .. : : :. : .:: ::.. .::: :. NP_001 NSASG-NVSWLWKQEMDEN--PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 QEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRK . .: : :.::: ::: : . . :. :: . ..... .:: ::: . NP_001 KCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDK- 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 RWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP .. : :. :... ::::..:. . :::: NP_001 --DDSKAGM------EEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 190 200 210 220 230 226 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:01:25 2016 done: Tue Nov 8 15:01:26 2016 Total Scan time: 6.220 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]