FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1684, 196 aa 1>>>pF1KE1684 196 - 196 aa - 196 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4468+/-0.000642; mu= 12.9604+/- 0.039 mean_var=66.8139+/-13.420, 0's: 0 Z-trim(111.6): 13 B-trim: 457 in 2/50 Lambda= 0.156906 statistics sampled from 12474 (12481) to 12474 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.383), width: 16 Scan time: 2.270 The best scores are: opt bits E(32554) CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 ( 196) 1321 307.0 4.7e-84 CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 ( 200) 1268 295.0 1.9e-80 CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 ( 200) 899 211.5 2.7e-55 >>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 (196 aa) initn: 1321 init1: 1321 opt: 1321 Z-score: 1622.6 bits: 307.0 E(32554): 4.7e-84 Smith-Waterman score: 1321; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR 130 140 150 160 170 180 190 pF1KE1 LLTRDLNCVASGDLCV :::::::::::::::: CCDS12 LLTRDLNCVASGDLCV 190 >>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 (200 aa) initn: 1268 init1: 1268 opt: 1268 Z-score: 1557.6 bits: 295.0 E(32554): 1.9e-80 Smith-Waterman score: 1268; 95.9% identity (99.0% similar) in 196 aa overlap (1-196:5-200) 10 20 30 40 50 pF1KE1 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA ::::: :::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF ::::::::::::::::.::::::::::::::::::::::.:::::::::::::::::::: CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF 130 140 150 160 170 180 180 190 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: CCDS42 NLFRLLTRDLNCVASGDLCV 190 200 >>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 (200 aa) initn: 948 init1: 521 opt: 899 Z-score: 1106.1 bits: 211.5 E(32554): 2.7e-55 Smith-Waterman score: 899; 74.1% identity (86.8% similar) in 189 aa overlap (8-196:8-191) 10 20 30 40 50 60 pF1KE1 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL ::: .. :.:.: ::... ..::::..::::::::: .::.:.::: CCDS12 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKARDAL 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD :::: ::. .: : .:: .:::: :::::::::::::::::::::::.: ::: :::: CCDS12 EESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALEDVLD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR :::::::::::::.:::::::::::: ::::::::::::::::::: ::::::::::::: CCDS12 QPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFR 120 130 140 150 160 170 190 pF1KE1 LLTRDLNCVASGDLCV ::::::. ::.:.::. CCDS12 LLTRDLKYVADGNLCLRTSTHPEST 180 190 200 196 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:26:06 2016 done: Mon Nov 7 15:26:06 2016 Total Scan time: 2.270 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]