FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0242, 452 aa 1>>>pF1KE0242 452 - 452 aa - 452 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7328+/-0.000677; mu= 13.9482+/- 0.041 mean_var=141.3697+/-27.752, 0's: 0 Z-trim(115.6): 10 B-trim: 97 in 1/53 Lambda= 0.107869 statistics sampled from 16115 (16123) to 16115 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.495), width: 16 Scan time: 3.400 The best scores are: opt bits E(32554) CCDS12522.1 RINL gene_id:126432|Hs108|chr19 ( 452) 3107 494.4 9.7e-140 CCDS59386.1 RINL gene_id:126432|Hs108|chr19 ( 566) 3107 494.5 1.1e-139 CCDS32144.1 RIN3 gene_id:79890|Hs108|chr14 ( 985) 450 81.2 5e-15 >>CCDS12522.1 RINL gene_id:126432|Hs108|chr19 (452 aa) initn: 3107 init1: 3107 opt: 3107 Z-score: 2622.3 bits: 494.4 E(32554): 9.7e-140 Smith-Waterman score: 3107; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452) 10 20 30 40 50 60 pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQDTPGKVLSIVNQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQDTPGKVLSIVNQLY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 LETHRGWGREQTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLSPEVDHPGPALASLLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LETHRGWGREQTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLSPEVDHPGPALASLLEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 EEEDLEGKEEGREDDPEEEGPEDVLTIHVQSLVRARSSYVARQYRSLRVRIASDSGGPHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EEEDLEGKEEGREDDPEEEGPEDVLTIHVQSLVRARSSYVARQYRSLRVRIASDSGGPHG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 SGDPATELLQDVRHLLTDLQDHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SGDPATELLQDVRHLLTDLQDHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 APLKPALWTRLRTLRAPELRRLRRRQTALRAGAGPPGAQGPGPEGQSPAPALRSRIHERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APLKPALWTRLRTLRAPELRRLRRRQTALRAGAGPPGAQGPGPEGQSPAPALRSRIHERL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 AHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE0 DVEFLMELLDPDELRGEAGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DVEFLMELLDPDELRGEAGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRR 370 380 390 400 410 420 430 440 450 pF1KE0 RTLHRKDHPRAQANLPFKEPWAEETVTGTSDN :::::::::::::::::::::::::::::::: CCDS12 RTLHRKDHPRAQANLPFKEPWAEETVTGTSDN 430 440 450 >>CCDS59386.1 RINL gene_id:126432|Hs108|chr19 (566 aa) initn: 3107 init1: 3107 opt: 3107 Z-score: 2621.0 bits: 494.5 E(32554): 1.1e-139 Smith-Waterman score: 3107; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:115-566) 10 20 30 pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLG :::::::::::::::::::::::::::::: CCDS59 LRSGPLPGEVNTYQIQKIPRGVSLESSNLCMPDLPHLLAFLSASRDVLPRTLLLPPPTLG 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE0 PRDEHTDPVQIGRVQQDTPGKVLSIVNQLYLETHRGWGREQTPQETEPEAAQRHDPAPRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 PRDEHTDPVQIGRVQQDTPGKVLSIVNQLYLETHRGWGREQTPQETEPEAAQRHDPAPRN 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE0 PAPHGVSWVKGPLSPEVDHPGPALASLLEEEEEDLEGKEEGREDDPEEEGPEDVLTIHVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 PAPHGVSWVKGPLSPEVDHPGPALASLLEEEEEDLEGKEEGREDDPEEEGPEDVLTIHVQ 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE0 SLVRARSSYVARQYRSLRVRIASDSGGPHGSGDPATELLQDVRHLLTDLQDHLAKDSYIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SLVRARSSYVARQYRSLRVRIASDSGGPHGSGDPATELLQDVRHLLTDLQDHLAKDSYIR 270 280 290 300 310 320 220 230 240 250 260 270 pF1KE0 AVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPELRRLRRRQTALR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 AVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPELRRLRRRQTALR 330 340 350 360 370 380 280 290 300 310 320 330 pF1KE0 AGAGPPGAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 AGAGPPGAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARG 390 400 410 420 430 440 340 350 360 370 380 390 pF1KE0 ENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALH 450 460 470 480 490 500 400 410 420 430 440 450 pF1KE0 HIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPFKEPWAEETVTGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 HIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPFKEPWAEETVTGTS 510 520 530 540 550 560 pF1KE0 DN :: CCDS59 DN >>CCDS32144.1 RIN3 gene_id:79890|Hs108|chr14 (985 aa) initn: 282 init1: 132 opt: 450 Z-score: 383.2 bits: 81.2 E(32554): 5e-15 Smith-Waterman score: 479; 29.1% identity (57.9% similar) in 444 aa overlap (18-431:449-874) 10 20 30 40 pF1KE0 MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQD :::: ::. :: .. . :.. . CCDS32 SDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAK-QPPVPPPRKKRISR-QLASTLP- 420 430 440 450 460 470 50 60 70 80 90 100 pF1KE0 TPGKVLSIVNQ-LYLETHR-GWGRE-QTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLS .: . . .: . ::: : :: :.: .:. .: :: . .. :: :. CCDS32 APLENAELCTQAMALETPTPGPPREGQSPA---SQAGTQHPPAQATAHSQSSPEFKGSLA 480 490 500 510 520 530 110 120 130 140 150 160 pF1KE0 PEVDHPGPALASLLEEEEEDLEGKEEGRE-DDPE-EEGPEDVL--TIHVQSLVRARSSYV : : .. . .. .:: .. ..: .. : .: . : :.. : . CCDS32 SLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFH 540 550 560 570 580 590 170 180 190 200 pF1KE0 A-----RQYRSLRVRIASDSGGPHGS---------------GDPATELLQDVRHLLTDLQ : :. . :..:.:.:. :: .::.::..: ..:.:. CCDS32 AFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIRTMMTQLK 600 610 620 630 640 650 210 220 230 240 250 pF1KE0 DHLAKDSYIRAVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPE-- ..: ... ..:. :.: ...:. .:.:. . :: ::: :. . :. ... . CCDS32 SYLLQSTELKALVD---PAL-HSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGS 660 670 680 690 700 260 270 280 290 300 310 pF1KE0 LRRLRRRQTALRAGAGPP-GAQGPGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLL :..:.. : .. : . :. :: .: .. .: .... .: : .:..:...:: CCDS32 LQQLKENQLVILATTTTDLGVTTSVPE----VPMME-KILQKFTSMHKAYSPEKKISILL 710 720 730 740 750 760 320 330 340 350 360 370 pF1KE0 EVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDTQLDVEFLMELLDPDELRGE ..:. .: ..: :. : ::: :::.: : : .. . :.::..:::.:: :: CCDS32 KTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARS-NLTEMLLNVEYMMELMDPALQLGE 770 780 790 800 810 820 380 390 400 410 420 430 pF1KE0 AGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRRRTLHRKDHPRAQANLPF ..::::: .:::.:: :. : . : :: :.. :.:.:.:::::.. :. CCDS32 GSYYLTTTYGALEHIKSYDKIT--VTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFI 830 840 850 860 870 880 440 450 pF1KE0 KEPWAEETVTGTSDN CCDS32 CVSYLEPEQQARTLASRADTQAQALCAQCAEKFAVERPQAHRLFVLVDGRCFQLADDALP 890 900 910 920 930 940 452 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:22:17 2016 done: Sun Nov 6 13:22:17 2016 Total Scan time: 3.400 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]