FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5271, 218 aa 1>>>pF1KE5271 218 - 218 aa - 218 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6199+/-0.000421; mu= 18.1532+/- 0.026 mean_var=67.3980+/-13.981, 0's: 0 Z-trim(110.2): 18 B-trim: 35 in 1/53 Lambda= 0.156225 statistics sampled from 18523 (18526) to 18523 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.217), width: 16 Scan time: 5.190 The best scores are: opt bits E(85289) NP_037366 (OMIM: 609596) eukaryotic translation in ( 218) 1450 335.7 3.6e-92 NP_001287921 (OMIM: 609596) eukaryotic translation ( 192) 928 218.0 8.6e-57 NP_001295322 (OMIM: 609596) eukaryotic translation ( 131) 889 209.0 2.9e-54 >>NP_037366 (OMIM: 609596) eukaryotic translation initia (218 aa) initn: 1450 init1: 1450 opt: 1450 Z-score: 1775.7 bits: 335.7 E(85289): 3.6e-92 Smith-Waterman score: 1450; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218) 10 20 30 40 50 60 pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 130 140 150 160 170 180 190 200 210 pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ :::::::::::::::::::::::::::::::::::::: NP_037 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 190 200 210 >>NP_001287921 (OMIM: 609596) eukaryotic translation ini (192 aa) initn: 1249 init1: 928 opt: 928 Z-score: 1140.6 bits: 218.0 E(85289): 8.6e-57 Smith-Waterman score: 1201; 87.6% identity (88.1% similar) in 218 aa overlap (1-218:1-192) 10 20 30 40 50 60 pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS ::::::::::::::::::::. ::::::::::::: NP_001 LDENMDLLEGITGFEDSVRKY--------------------------SQLKVWMSKYGWS 130 140 150 190 200 210 pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ :::::::::::::::::::::::::::::::::::::: NP_001 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 160 170 180 190 >>NP_001295322 (OMIM: 609596) eukaryotic translation ini (131 aa) initn: 889 init1: 889 opt: 889 Z-score: 1095.2 bits: 209.0 E(85289): 2.9e-54 Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 131 aa overlap (88-218:1-131) 60 70 80 90 100 110 pF1KE5 PAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAF :::::::::::::::::::::::::::::: NP_001 MIDQAHQEERPIRQILYLGDLLETCHFQAF 10 20 30 120 130 140 150 160 170 pF1KE5 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY 40 50 60 70 80 90 180 190 200 210 pF1KE5 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ ::::::::::::::::::::::::::::::::::::::::: NP_001 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 100 110 120 130 218 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:18:32 2016 done: Mon Nov 7 23:18:33 2016 Total Scan time: 5.190 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]