FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1618, 128 aa 1>>>pF1KE1618 128 - 128 aa - 128 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5920+/-0.000676; mu= 9.7119+/- 0.041 mean_var=69.4804+/-13.900, 0's: 0 Z-trim(110.4): 41 B-trim: 0 in 0/50 Lambda= 0.153866 statistics sampled from 11573 (11615) to 11573 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.357), width: 16 Scan time: 1.560 The best scores are: opt bits E(32554) CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 ( 128) 855 197.9 1.4e-51 CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 ( 156) 481 115.0 1.6e-26 CCDS11177.1 UBB gene_id:7314|Hs108|chr17 ( 229) 483 115.5 1.7e-26 CCDS9260.1 UBC gene_id:7316|Hs108|chr12 ( 685) 485 116.1 3.1e-26 CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 ( 81) 304 75.5 6.2e-15 >>CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 (128 aa) initn: 855 init1: 855 opt: 855 Z-score: 1039.6 bits: 197.9 E(32554): 1.4e-51 Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 70 80 90 100 110 120 pF1KE1 LRPKKKVK :::::::: CCDS12 LRPKKKVK >>CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 (156 aa) initn: 507 init1: 481 opt: 481 Z-score: 589.6 bits: 115.0 E(32554): 1.6e-26 Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76) 10 20 30 40 50 60 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN :::::::::::::::: CCDS33 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 70 80 90 100 110 120 >>CCDS11177.1 UBB gene_id:7314|Hs108|chr17 (229 aa) initn: 952 init1: 483 opt: 483 Z-score: 589.4 bits: 115.5 E(32554): 1.7e-26 Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:77-153) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS11 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN ::::::::::::::::::::::::::::::::::::::::::::::. CCDS11 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 110 120 130 140 150 160 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS11 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 170 180 190 200 210 220 >-- initn: 481 init1: 481 opt: 481 Z-score: 587.0 bits: 115.0 E(32554): 2.2e-26 Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76) 10 20 30 40 50 60 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN :::::::::::::::: CCDS11 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 70 80 90 100 110 120 >-- initn: 474 init1: 474 opt: 474 Z-score: 578.6 bits: 113.5 E(32554): 6.6e-26 Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:154-228) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ :::::::::::::::::::::::::::::: CCDS11 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 130 140 150 160 170 180 40 50 60 70 80 90 pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC ::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 190 200 210 220 100 110 120 pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK >>CCDS9260.1 UBC gene_id:7316|Hs108|chr12 (685 aa) initn: 4237 init1: 485 opt: 485 Z-score: 584.4 bits: 116.1 E(32554): 3.1e-26 Smith-Waterman score: 485; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:609-685) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 580 590 600 610 620 630 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN ::::::::::::::::::::::::::::::::::::::::::::::. CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 640 650 660 670 680 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK >-- initn: 3297 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26 Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:381-457) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 360 370 380 390 400 410 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN ::::::::::::::::::::::::::::::::::::::::::::::. CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 420 430 440 450 460 470 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 480 490 500 510 520 530 >-- initn: 1895 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26 Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:77-153) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN ::::::::::::::::::::::::::::::::::::::::::::::. CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 110 120 130 140 150 160 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 170 180 190 200 210 220 >-- initn: 952 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26 Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:229-305) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 200 210 220 230 240 250 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN ::::::::::::::::::::::::::::::::::::::::::::::. CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 260 270 280 290 300 310 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 320 330 340 350 360 370 >-- initn: 481 init1: 481 opt: 481 Z-score: 579.6 bits: 115.3 E(32554): 5.8e-26 Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76) 10 20 30 40 50 60 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN :::::::::::::::: CCDS92 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 70 80 90 100 110 120 >-- initn: 483 init1: 481 opt: 481 Z-score: 579.6 bits: 115.3 E(32554): 5.8e-26 Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:533-608) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI :::::::::::::::::::::::::::::: CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 510 520 530 540 550 560 40 50 60 70 80 90 pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN :::::::::::::::::::::::::::::::::::::::::::::: CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 570 580 590 600 610 620 100 110 120 pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 630 640 650 660 670 680 >-- initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25 Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:458-532) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ :::::::::::::::::::::::::::::: CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 430 440 450 460 470 480 40 50 60 70 80 90 pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC ::::::::::::::::::::::::::::::::::::::::::::: CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 490 500 510 520 530 540 100 110 120 pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 550 560 570 580 590 600 >-- initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25 Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:154-228) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ :::::::::::::::::::::::::::::: CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 130 140 150 160 170 180 40 50 60 70 80 90 pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC ::::::::::::::::::::::::::::::::::::::::::::: CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 190 200 210 220 230 240 100 110 120 pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 250 260 270 280 290 300 >-- initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25 Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:306-380) 10 20 30 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ :::::::::::::::::::::::::::::: CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 280 290 300 310 320 330 40 50 60 70 80 90 pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC ::::::::::::::::::::::::::::::::::::::::::::: CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 340 350 360 370 380 390 100 110 120 pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 400 410 420 430 440 450 >>CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 (81 aa) initn: 312 init1: 303 opt: 304 Z-score: 381.6 bits: 75.5 E(32554): 6.2e-15 Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-84:1-81) 10 20 30 40 50 60 pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN : : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::. CCDS96 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN : :.::::: :::: .::: CCDS96 ILGGSVLHLVLALRGG---GGLRQ 70 80 128 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:24:01 2016 done: Sun Nov 6 13:24:01 2016 Total Scan time: 1.560 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]