FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3122, 308 aa
  1>>>pF1KE3122 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1599+/-0.00066; mu= 13.1855+/- 0.040
 mean_var=99.5173+/-19.600, 0's: 0 Z-trim(113.8): 43  B-trim: 0 in 0/51
 Lambda= 0.128566
 statistics sampled from 14401 (14444) to 14401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.444), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS12376.1 GDF15 gene_id:9518|Hs108|chr19         ( 308) 2104 399.8 1.4e-111


>>CCDS12376.1 GDF15 gene_id:9518|Hs108|chr19              (308 aa)
 initn: 2104 init1: 2104 opt: 2104  Z-score: 2116.8  bits: 399.8 E(32554): 1.4e-111
Smith-Waterman score: 2104; 99.7% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KE3 MPGQELRTVNGSQMLLVLLVLSWLPHGGALSLAEASRASFPGPSELHTEDSRFRELRKRY
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS12 MPGQELRTVNGSQMLLVLLVLSWLPHGGALSLAEASRASFPGPSELHSEDSRFRELRKRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EDLLTRLRANQSWEDSNTDLVPAPAVRILTPEVRLGSGGHLHLRISRAALPEGLPEASRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EDLLTRLRANQSWEDSNTDLVPAPAVRILTPEVRLGSGGHLHLRISRAALPEGLPEASRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 HRALFRLSPTASRSWDVTRPLRRQLSLARPQAPALHLRLSPPPSQSDQLLAESSSARPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HRALFRLSPTASRSWDVTRPLRRQLSLARPQAPALHLRLSPPPSQSDQLLAESSSARPQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ELHLRPQAARGRRRARARNGDHCPLGPGRCCRLHTVRASLEDLGWADWVLSPREVQVTMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELHLRPQAARGRRRARARNGDHCPLGPGRCCRLHTVRASLEDLGWADWVLSPREVQVTMC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IGACPSQFRAANMHAQIKTSLHRLKPDTVPAPCCVPASYNPMVLIQKTDTGVSLQTYDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IGACPSQFRAANMHAQIKTSLHRLKPDTVPAPCCVPASYNPMVLIQKTDTGVSLQTYDDL
              250       260       270       280       290       300

               
pF1KE3 LAKDCHCI
       ::::::::
CCDS12 LAKDCHCI
               




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:24:00 2016 done: Sun Nov  6 02:24:01 2016
 Total Scan time:  3.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]