FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5364, 299 aa 1>>>pF1KE5364 299 - 299 aa - 299 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4025+/-0.000767; mu= 15.8159+/- 0.046 mean_var=72.3819+/-14.940, 0's: 0 Z-trim(109.0): 11 B-trim: 50 in 1/49 Lambda= 0.150751 statistics sampled from 10565 (10567) to 10565 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.325), width: 16 Scan time: 1.690 The best scores are: opt bits E(32554) CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19 ( 299) 2042 452.9 1.4e-127 CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9 ( 291) 836 190.6 1.2e-48 >>CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19 (299 aa) initn: 2042 init1: 2042 opt: 2042 Z-score: 2404.1 bits: 452.9 E(32554): 1.4e-127 Smith-Waterman score: 2042; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299) 10 20 30 40 50 60 pF1KE5 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD 250 260 270 280 290 >>CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9 (291 aa) initn: 829 init1: 829 opt: 836 Z-score: 986.8 bits: 190.6 E(32554): 1.2e-48 Smith-Waterman score: 836; 41.5% identity (76.2% similar) in 294 aa overlap (11-299:7-291) 10 20 30 40 50 60 pF1KE5 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML ::::.:::. .:: ::.....::.. .: .:::. :. ..::.::. ::: CCDS67 MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAML 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA ::::. ::. :::.:: . ...:...:::::..::. :::: :: . .:::.:. . CCDS67 HCFGGGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASG 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI ::::.:. ::. :. ::. .:..::.:::: ::..:.: ....:::.:..: :::: .: CCDS67 MKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEW 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL :.::.:.:..: :...::.:.:. : .:: .:.:..:.:.:. :. . .:.. . : . CCDS67 LKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPF 180 190 200 210 220 230 250 260 270 280 290 pF1KE5 EGYICPVLFG-----SACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKA : . .::: :.: .. ... : :.: ... .: . :.. .::.. CCDS67 EDTLSWMLFGWQQPFSSC----EKKSEAKSPSNGV-----GSLASKPVDVASDNVKKKHT 240 250 260 270 280 pF1KE5 KKAD :: . CCDS67 KKNE 290 299 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:08:37 2016 done: Tue Nov 8 00:08:37 2016 Total Scan time: 1.690 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]