FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3025, 142 aa
  1>>>pF1KE3025 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2035+/-0.00054; mu= 12.5003+/- 0.033
 mean_var=61.0461+/-12.210, 0's: 0 Z-trim(113.5): 10  B-trim: 47 in 1/50
 Lambda= 0.164152
 statistics sampled from 14133 (14141) to 14133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.434), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS12302.1 RLN3 gene_id:117579|Hs108|chr19        ( 142)  991 242.0 9.6e-65
CCDS82304.1 RLN3 gene_id:117579|Hs108|chr19        ( 109)  435 110.2 3.3e-25


>>CCDS12302.1 RLN3 gene_id:117579|Hs108|chr19             (142 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1275.9  bits: 242.0 E(32554): 9.6e-65
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE3 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
               70        80        90       100       110       120

              130       140  
pF1KE3 LAGLSSSCCKWGCSKSEISSLC
       ::::::::::::::::::::::
CCDS12 LAGLSSSCCKWGCSKSEISSLC
              130       140  

>>CCDS82304.1 RLN3 gene_id:117579|Hs108|chr19             (109 aa)
 initn: 435 init1: 435 opt: 435  Z-score: 566.0  bits: 110.2 E(32554): 3.3e-25
Smith-Waterman score: 435; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE3 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
       :::                                                         
CCDS82 EAMEKNIEAPRSKFTCSRLEKLDSCSVSPAPKCTRSSINKERYLPGCRC           
               70        80        90       100                    




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:27:33 2016 done: Sun Nov  6 04:27:34 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]