FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4352, 369 aa 1>>>pF1KE4352 369 - 369 aa - 369 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5148+/-0.000995; mu= 14.3064+/- 0.060 mean_var=55.0259+/-10.901, 0's: 0 Z-trim(102.4): 18 B-trim: 0 in 0/52 Lambda= 0.172898 statistics sampled from 6935 (6940) to 6935 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.213), width: 16 Scan time: 2.530 The best scores are: opt bits E(32554) CCDS12276.1 DHPS gene_id:1725|Hs108|chr19 ( 369) 2437 616.3 1.3e-176 CCDS59354.1 DHPS gene_id:1725|Hs108|chr19 ( 327) 2001 507.5 6.5e-144 CCDS12277.1 DHPS gene_id:1725|Hs108|chr19 ( 322) 1727 439.2 2.4e-123 >>CCDS12276.1 DHPS gene_id:1725|Hs108|chr19 (369 aa) initn: 2437 init1: 2437 opt: 2437 Z-score: 3284.1 bits: 616.3 E(32554): 1.3e-176 Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369) 10 20 30 40 50 60 pF1KE4 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 310 320 330 340 350 360 pF1KE4 AFMHEKNED ::::::::: CCDS12 AFMHEKNED >>CCDS59354.1 DHPS gene_id:1725|Hs108|chr19 (327 aa) initn: 2001 init1: 2001 opt: 2001 Z-score: 2697.2 bits: 507.5 E(32554): 6.5e-144 Smith-Waterman score: 2001; 100.0% identity (100.0% similar) in 301 aa overlap (69-369:27-327) 40 50 60 70 80 90 pF1KE4 GVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCT :::::::::::::::::::::::::::::: CCDS59 MPIIPAFWEAEAGGSREEEFETSLANMIEKKLEPLSQDEDQHADLTQSRRPLTSCT 10 20 30 40 50 100 110 120 130 140 150 pF1KE4 IFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 IFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKEL 60 70 80 90 100 110 160 170 180 190 200 210 pF1KE4 RENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 RENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPE 120 130 140 150 160 170 220 230 240 250 260 270 pF1KE4 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGM 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE4 IILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 IILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVK 240 250 260 270 280 290 340 350 360 pF1KE4 VYADASLVFPLLVAETFAQKMDAFMHEKNED ::::::::::::::::::::::::::::::: CCDS59 VYADASLVFPLLVAETFAQKMDAFMHEKNED 300 310 320 >>CCDS12277.1 DHPS gene_id:1725|Hs108|chr19 (322 aa) initn: 1727 init1: 1727 opt: 1727 Z-score: 2328.0 bits: 439.2 E(32554): 2.4e-123 Smith-Waterman score: 2028; 87.3% identity (87.3% similar) in 369 aa overlap (1-369:1-322) 10 20 30 40 50 60 pF1KE4 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA ::::::::::::::::::::: CCDS12 LGDMIFFHSYKNPGLVLDIVE--------------------------------------- 250 260 310 320 330 340 350 360 pF1KE4 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 --------AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 270 280 290 300 310 pF1KE4 AFMHEKNED ::::::::: CCDS12 AFMHEKNED 320 369 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:07:15 2016 done: Sun Nov 6 02:07:15 2016 Total Scan time: 2.530 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]