FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3987, 326 aa 1>>>pF1KE3987 326 - 326 aa - 326 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8048+/-0.00084; mu= 13.6301+/- 0.050 mean_var=78.5775+/-16.350, 0's: 0 Z-trim(108.3): 66 B-trim: 482 in 1/48 Lambda= 0.144686 statistics sampled from 10081 (10147) to 10081 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.312), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS12218.1 FBXL12 gene_id:54850|Hs108|chr19 ( 326) 2209 470.5 8.3e-133 CCDS82287.1 FBXL12 gene_id:54850|Hs108|chr19 ( 273) 1841 393.6 9.5e-110 >>CCDS12218.1 FBXL12 gene_id:54850|Hs108|chr19 (326 aa) initn: 2209 init1: 2209 opt: 2209 Z-score: 2497.8 bits: 470.5 E(32554): 8.3e-133 Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326) 10 20 30 40 50 60 pF1KE3 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE 250 260 270 280 290 300 310 320 pF1KE3 KILCKGLPHCMVIVRACPKESMDWWM :::::::::::::::::::::::::: CCDS12 KILCKGLPHCMVIVRACPKESMDWWM 310 320 >>CCDS82287.1 FBXL12 gene_id:54850|Hs108|chr19 (273 aa) initn: 1841 init1: 1841 opt: 1841 Z-score: 2083.8 bits: 393.6 E(32554): 9.5e-110 Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273) 30 40 50 60 70 80 pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG :::::::::::::::::::::::::::::: CCDS82 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG 10 20 30 90 100 110 120 130 140 pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD 220 230 240 250 260 270 pF1KE3 WWM ::: CCDS82 WWM 326 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:11:58 2016 done: Sun Nov 6 08:11:58 2016 Total Scan time: 2.110 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]