FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4035, 246 aa 1>>>pF1KE4035 246 - 246 aa - 246 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2838+/-0.000285; mu= 15.0503+/- 0.018 mean_var=78.9526+/-15.368, 0's: 0 Z-trim(119.3): 69 B-trim: 88 in 1/55 Lambda= 0.144341 statistics sampled from 33135 (33204) to 33135 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.389), width: 16 Scan time: 7.380 The best scores are: opt bits E(85289) NP_001005415 (OMIM: 613332) E3 ubiquitin-protein l ( 246) 1726 368.3 6.9e-102 NP_057580 (OMIM: 613332) E3 ubiquitin-protein liga ( 246) 1726 368.3 6.9e-102 XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 246) 1726 368.3 6.9e-102 XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 1387 297.7 1.3e-80 XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 1387 297.7 1.3e-80 NP_848545 (OMIM: 613333) E3 ubiquitin-protein liga ( 253) 1085 234.8 1.1e-61 NP_001005416 (OMIM: 613332) E3 ubiquitin-protein l ( 176) 886 193.3 2.4e-49 XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 176) 886 193.3 2.4e-49 XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 154) 553 123.9 1.6e-28 XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27 XP_011541433 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27 XP_011541431 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27 XP_016864503 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 199) 538 120.8 1.7e-27 XP_011541430 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 305) 538 121.0 2.4e-27 XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 327 77.0 3.9e-14 NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 327 77.0 3.9e-14 XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 327 77.0 3.9e-14 NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 327 77.0 3.9e-14 NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 306 72.7 8.1e-13 XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 306 72.7 8.1e-13 XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13 XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13 XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13 NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 309 73.5 8.9e-13 XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13 XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13 NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 300 71.4 1.8e-12 XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 300 71.4 1.9e-12 XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 300 71.4 1.9e-12 XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 297 71.0 4.8e-12 NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 223 55.5 1.7e-07 NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 207 52.1 1.5e-06 NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 193 49.2 1.3e-05 XP_016864433 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 460) 190 48.7 2.2e-05 XP_011512238 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 637) 190 48.8 2.8e-05 XP_011512236 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 791) 190 48.9 3.3e-05 NP_001257589 (OMIM: 613297) E3 ubiquitin-protein l ( 862) 190 48.9 3.5e-05 NP_005876 (OMIM: 613297) E3 ubiquitin-protein liga ( 910) 190 48.9 3.6e-05 XP_005257163 (OMIM: 613337) PREDICTED: probable E3 ( 752) 185 47.8 6.5e-05 XP_005257160 (OMIM: 613337) PREDICTED: probable E3 ( 799) 185 47.8 6.8e-05 NP_001275709 (OMIM: 613337) probable E3 ubiquitin- ( 799) 185 47.8 6.8e-05 XP_011522739 (OMIM: 613337) PREDICTED: probable E3 ( 807) 185 47.8 6.8e-05 NP_689811 (OMIM: 613337) probable E3 ubiquitin-pro ( 808) 185 47.8 6.8e-05 NP_001094345 (OMIM: 613337) probable E3 ubiquitin- ( 808) 185 47.8 6.8e-05 XP_005257159 (OMIM: 613337) PREDICTED: probable E3 ( 824) 185 47.8 6.9e-05 XP_005257157 (OMIM: 613337) PREDICTED: probable E3 ( 825) 185 47.8 6.9e-05 XP_011522738 (OMIM: 613337) PREDICTED: probable E3 ( 825) 185 47.8 6.9e-05 NP_001275708 (OMIM: 613337) probable E3 ubiquitin- ( 846) 185 47.8 7.1e-05 XP_005257155 (OMIM: 613337) PREDICTED: probable E3 ( 862) 185 47.8 7.2e-05 XP_011522737 (OMIM: 613337) PREDICTED: probable E3 ( 862) 185 47.8 7.2e-05 >>NP_001005415 (OMIM: 613332) E3 ubiquitin-protein ligas (246 aa) initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102 Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: NP_001 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV 190 200 210 220 230 240 pF1KE4 AEETPV :::::: NP_001 AEETPV >>NP_057580 (OMIM: 613332) E3 ubiquitin-protein ligase M (246 aa) initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102 Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: NP_057 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV 190 200 210 220 230 240 pF1KE4 AEETPV :::::: NP_057 AEETPV >>XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (246 aa) initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102 Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: XP_016 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV 190 200 210 220 230 240 pF1KE4 AEETPV :::::: XP_016 AEETPV >>XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa) initn: 1717 init1: 1379 opt: 1387 Z-score: 1568.4 bits: 297.7 E(85289): 1.3e-80 Smith-Waterman score: 1696; 95.7% identity (96.1% similar) in 256 aa overlap (1-246:1-256) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: XP_011 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 LTIALFTIYVLWTL----------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS :::::::::::::: :::::::::::::::::::::::::::::::::::: XP_011 LTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS 190 200 210 220 230 240 240 pF1KE4 PLAAGLLKKVAEETPV :::::::::::::::: XP_011 PLAAGLLKKVAEETPV 250 >>XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa) initn: 1717 init1: 1379 opt: 1387 Z-score: 1568.4 bits: 297.7 E(85289): 1.3e-80 Smith-Waterman score: 1696; 95.7% identity (96.1% similar) in 256 aa overlap (1-246:1-256) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: XP_011 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 LTIALFTIYVLWTL----------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS :::::::::::::: :::::::::::::::::::::::::::::::::::: XP_011 LTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS 190 200 210 220 230 240 240 pF1KE4 PLAAGLLKKVAEETPV :::::::::::::::: XP_011 PLAAGLLKKVAEETPV 250 >>NP_848545 (OMIM: 613333) E3 ubiquitin-protein ligase M (253 aa) initn: 1123 init1: 893 opt: 1085 Z-score: 1228.6 bits: 234.8 E(85289): 1.1e-61 Smith-Waterman score: 1085; 65.1% identity (82.0% similar) in 255 aa overlap (1-246:1-253) 10 20 30 40 50 pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD :::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.::: NP_848 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF : : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .: NP_848 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL :::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.: NP_848 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE4 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA :::::::::.::::::..::::::::::.::.:::.:::.: : : . : . :...: NP_848 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPK--SVNVPSNQPSL 190 200 210 220 230 240 pF1KE4 AGL--LKKVAEETPV :: .:. ..:: : NP_848 LGLHSVKRNSKETVV 240 250 >>NP_001005416 (OMIM: 613332) E3 ubiquitin-protein ligas (176 aa) initn: 886 init1: 886 opt: 886 Z-score: 1006.8 bits: 193.3 E(85289): 2.4e-49 Smith-Waterman score: 1088; 71.1% identity (71.5% similar) in 246 aa overlap (1-246:1-176) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: NP_001 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::: NP_001 PLTE-------------------------------------------------------- 190 200 210 220 230 240 pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV :::::::::::::::::::::::::::::::::::::::::::::: NP_001 --------------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV 130 140 150 160 170 pF1KE4 AEETPV :::::: NP_001 AEETPV >>XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (176 aa) initn: 886 init1: 886 opt: 886 Z-score: 1006.8 bits: 193.3 E(85289): 2.4e-49 Smith-Waterman score: 1088; 71.1% identity (71.5% similar) in 246 aa overlap (1-246:1-176) 10 20 30 40 50 60 pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: XP_006 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA :::: XP_006 PLTE-------------------------------------------------------- 190 200 210 220 230 240 pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV :::::::::::::::::::::::::::::::::::::::::::::: XP_006 --------------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV 130 140 150 160 170 pF1KE4 AEETPV :::::: XP_006 AEETPV >>XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (154 aa) initn: 571 init1: 362 opt: 553 Z-score: 632.8 bits: 123.9 E(85289): 1.6e-28 Smith-Waterman score: 553; 64.1% identity (79.4% similar) in 131 aa overlap (1-124:1-131) 10 20 30 40 50 pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD :::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.::: XP_016 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF : : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .: XP_016 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL :::..::::.: XP_016 AVERKPRPLVEPTVGCSFLTGQEPRAVVCTLAAM 130 140 150 >>XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (280 aa) initn: 1101 init1: 531 opt: 541 Z-score: 615.8 bits: 121.6 E(85289): 1.5e-27 Smith-Waterman score: 1009; 58.6% identity (73.9% similar) in 280 aa overlap (3-246:3-280) 10 20 30 40 50 pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD :. : ::: : ::..: : :.:: : : :::: ::...::.:::::.::: XP_011 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF : : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .: XP_011 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 70 80 90 100 110 120 120 130 140 pF1KE4 AVEKRPRPLTE---------------------------WLKDPGPRTEKRTLCCDMVCFL :::..::::.: ::..:::. ::::: :::::: XP_011 AVERKPRPLVEVQQIWGKIRKHPCQVFRLCRPPHSSWNWLRNPGPQHEKRTLFGDMVCFL 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE4 FITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSE ::::::.:::::::::: :::.. :.::::::::::.::::::..::::::::::.::.: XP_011 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE 190 200 210 220 230 240 210 220 230 240 pF1KE4 WRKTNQKVRLKIREADSPEGPQHSPLAAGL--LKKVAEETPV ::.:::.: : : . : . :...: :: .:. ..:: : XP_011 WRRTNQRVILLIPK--SVNVPSNQPSLLGLHSVKRNSKETVV 250 260 270 280 246 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:45:54 2016 done: Sun Nov 6 01:45:55 2016 Total Scan time: 7.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]