FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6686, 282 aa 1>>>pF1KE6686 282 - 282 aa - 282 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0330+/-0.000707; mu= 15.2141+/- 0.043 mean_var=151.5412+/-28.608, 0's: 0 Z-trim(116.2): 50 B-trim: 49 in 1/53 Lambda= 0.104186 statistics sampled from 16722 (16775) to 16722 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.515), width: 16 Scan time: 2.140 The best scores are: opt bits E(32554) CCDS12198.1 CD320 gene_id:51293|Hs108|chr19 ( 282) 1952 304.1 7.6e-83 CCDS54210.1 CD320 gene_id:51293|Hs108|chr19 ( 240) 1315 208.2 4.6e-54 CCDS579.1 LRP8 gene_id:7804|Hs108|chr1 ( 700) 399 71.1 2.5e-12 >>CCDS12198.1 CD320 gene_id:51293|Hs108|chr19 (282 aa) initn: 1952 init1: 1952 opt: 1952 Z-score: 1600.8 bits: 304.1 E(32554): 7.6e-83 Smith-Waterman score: 1952; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA 190 200 210 220 230 240 250 260 270 280 pF1KE6 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP :::::::::::::::::::::::::::::::::::::::::: CCDS12 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP 250 260 270 280 >>CCDS54210.1 CD320 gene_id:51293|Hs108|chr19 (240 aa) initn: 1609 init1: 1315 opt: 1315 Z-score: 1084.2 bits: 208.2 E(32554): 4.6e-54 Smith-Waterman score: 1529; 85.1% identity (85.1% similar) in 282 aa overlap (1-282:1-240) 10 20 30 40 50 60 pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQ :::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MSGGWMAQVGAWRTGALGLALLLLLGLGLGLEAAASPLSTPTSAQAAG------------ 10 20 30 40 70 80 90 100 110 120 pF1KE6 CRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGT :::::::::::::::::::::::::::::: CCDS54 ------------------------------IEPCTQKGQCPPPPGLPCPCTGVSDCSGGT 50 60 70 130 140 150 160 170 180 pF1KE6 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATT 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE6 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSA 140 150 160 170 180 190 250 260 270 280 pF1KE6 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP :::::::::::::::::::::::::::::::::::::::::: CCDS54 SLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP 200 210 220 230 240 >>CCDS579.1 LRP8 gene_id:7804|Hs108|chr1 (700 aa) initn: 398 init1: 143 opt: 399 Z-score: 334.8 bits: 71.1 E(32554): 2.5e-12 Smith-Waterman score: 399; 37.7% identity (57.9% similar) in 183 aa overlap (6-182:3-178) 10 20 30 40 50 pF1KE6 MSGGWMAQVGAWRTGALGLALLLLLGLGLG--LEAAASPLSTPTSAQAAGPSSGSCPPTK . . : : :: : ::::: : : :::.:: ..: ::.. .: . CCDS57 MGLPEPGPLRLLALLLLLLLLLLLQLQHLAAAAADPL---LGGQ--GPAK-DCEKDQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 FQCRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKG-QCPPPPGLPC--PCTGVSD ::::. :.: .::::.: :: : :::..: . :... : . : : . CCDS57 FQCRNER-CIPSVWRCDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 CSGGTDKKLRNCSRLACLAGELRC-TLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILP : :.:.. .:.. .: : .: : : :.: .:::::. :: ..:: ::.:. CCDS57 CPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGADEAGCATSLGTC 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 EGDATTMGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAA .:: : CCDS57 RGDEFQCGDGTCVLAIKHCNQEQDCPDGSDEAGCLQGLNECLHNNGGCSHICTDLKIGFE 180 190 200 210 220 230 282 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:24:50 2016 done: Tue Nov 8 15:24:50 2016 Total Scan time: 2.140 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]