FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5135, 108 aa
  1>>>pF1KE5135 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5539+/-0.00067; mu= 14.5197+/- 0.040
 mean_var=74.8599+/-14.267, 0's: 0 Z-trim(112.0): 13  B-trim: 45 in 1/49
 Lambda= 0.148235
 statistics sampled from 12861 (12872) to 12861 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.395), width:  16
 Scan time:  1.010

The best scores are:                                      opt bits E(32554)
CCDS12182.1 RETN gene_id:56729|Hs108|chr19         ( 108)  759 170.3   2e-43
CCDS2953.1 RETNLB gene_id:84666|Hs108|chr3         ( 111)  379 89.1   6e-19


>>CCDS12182.1 RETN gene_id:56729|Hs108|chr19              (108 aa)
 initn: 759 init1: 759 opt: 759  Z-score: 893.0  bits: 170.3 E(32554): 2e-43
Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE5 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
               10        20        30        40        50        60

               70        80        90       100        
pF1KE5 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
               70        80        90       100        

>>CCDS2953.1 RETNLB gene_id:84666|Hs108|chr3              (111 aa)
 initn: 399 init1: 292 opt: 379  Z-score: 453.7  bits: 89.1 E(32554): 6e-19
Smith-Waterman score: 379; 49.0% identity (76.0% similar) in 104 aa overlap (4-106:7-110)

                  10        20        30        40         50      
pF1KE5    MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAIS-SIGLECQSVTS
             : :.:.:.: :.  ..: ::.. .....:..: .:: .     :  : : :: :
CCDS29 MGPSSCLLLILIPLLQLINPGSTQCSLDSVMDKKIKDVLNSLEYSPSPISKKLSCASVKS
               10        20        30        40        50        60

         60        70        80        90       100        
pF1KE5 RGDLATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
       .:  ..:: :.:::::.:: .::::::. ::::::::. .::: ::::..  
CCDS29 QGRPSSCPAGMAVTGCACGYGCGSWDVQLETTCHCQCSVVDWTTARCCHLT 
               70        80        90       100       110  




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:42:35 2016 done: Mon Nov  7 21:42:35 2016
 Total Scan time:  1.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]