FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1678, 193 aa
  1>>>pF1KE1678 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0569+/-0.000307; mu= 14.4289+/- 0.019
 mean_var=62.8254+/-12.880, 0's: 0 Z-trim(116.6): 17  B-trim: 0 in 0/50
 Lambda= 0.161811
 statistics sampled from 27974 (27989) to 27974 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.328), width:  16
 Scan time:  6.130

The best scores are:                                      opt bits E(85289)
NP_001243 (OMIM: 602840) CD70 antigen isoform 1 [H ( 193) 1329 318.3 4.9e-87
NP_001317261 (OMIM: 602840) CD70 antigen isoform 2 ( 208) 1035 249.7 2.4e-66


>>NP_001243 (OMIM: 602840) CD70 antigen isoform 1 [Homo   (193 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1683.6  bits: 318.3 E(85289): 4.9e-87
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
              130       140       150       160       170       180

              190   
pF1KE1 TDETFFGVQWVRP
       :::::::::::::
NP_001 TDETFFGVQWVRP
              190   

>>NP_001317261 (OMIM: 602840) CD70 antigen isoform 2 [Ho  (208 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1312.2  bits: 249.7 E(85289): 2.4e-66
Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
       ::::::::::::::::::::::::::::::                              
NP_001 SRHHPTTLAVGICSPASRSISLLRLSFHQGLFGFWNWGLKVKCFLRHLIWTAHCFIPLTQ
              130       140       150       160       170       180




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:29:50 2016 done: Sun Nov  6 13:29:51 2016
 Total Scan time:  6.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]