FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1678, 193 aa 1>>>pF1KE1678 193 - 193 aa - 193 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1023+/-0.000678; mu= 14.1528+/- 0.041 mean_var=62.7367+/-13.030, 0's: 0 Z-trim(110.1): 12 B-trim: 214 in 1/49 Lambda= 0.161925 statistics sampled from 11337 (11346) to 11337 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.349), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS12170.1 CD70 gene_id:970|Hs108|chr19 ( 193) 1329 318.4 1.7e-87 CCDS82283.1 CD70 gene_id:970|Hs108|chr19 ( 208) 1035 249.8 8.5e-67 >>CCDS12170.1 CD70 gene_id:970|Hs108|chr19 (193 aa) initn: 1329 init1: 1329 opt: 1329 Z-score: 1684.3 bits: 318.4 E(32554): 1.7e-87 Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN 130 140 150 160 170 180 190 pF1KE1 TDETFFGVQWVRP ::::::::::::: CCDS12 TDETFFGVQWVRP 190 >>CCDS82283.1 CD70 gene_id:970|Hs108|chr19 (208 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1312.7 bits: 249.8 E(32554): 8.5e-67 Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN :::::::::::::::::::::::::::::: CCDS82 SRHHPTTLAVGICSPASRSISLLRLSFHQGLFGFWNWGLKVKCFLRHLIWTAHCFIPLTQ 130 140 150 160 170 180 193 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:29:49 2016 done: Sun Nov 6 13:29:50 2016 Total Scan time: 2.120 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]