FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5055, 197 aa 1>>>pF1KE5055 197 - 197 aa - 197 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0617+/-0.000608; mu= 16.9719+/- 0.037 mean_var=89.8409+/-18.034, 0's: 0 Z-trim(114.1): 12 B-trim: 11 in 1/49 Lambda= 0.135312 statistics sampled from 14688 (14700) to 14688 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.452), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS12151.1 NRTN gene_id:4902|Hs108|chr19 ( 197) 1354 273.0 8.3e-74 CCDS75237.1 GDNF gene_id:2668|Hs108|chr5 ( 159) 336 74.2 4.7e-14 CCDS3923.1 GDNF gene_id:2668|Hs108|chr5 ( 185) 336 74.3 5.3e-14 CCDS54846.1 GDNF gene_id:2668|Hs108|chr5 ( 202) 336 74.3 5.6e-14 CCDS3922.1 GDNF gene_id:2668|Hs108|chr5 ( 211) 336 74.3 5.8e-14 CCDS54845.1 GDNF gene_id:2668|Hs108|chr5 ( 228) 336 74.3 6.1e-14 CCDS501.1 ARTN gene_id:9048|Hs108|chr1 ( 220) 330 73.2 1.3e-13 CCDS502.1 ARTN gene_id:9048|Hs108|chr1 ( 228) 330 73.2 1.4e-13 CCDS12164.1 PSPN gene_id:5623|Hs108|chr19 ( 156) 298 66.8 8e-12 >>CCDS12151.1 NRTN gene_id:4902|Hs108|chr19 (197 aa) initn: 1354 init1: 1354 opt: 1354 Z-score: 1438.6 bits: 273.0 E(32554): 8.3e-74 Smith-Waterman score: 1354; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE5 MQRWKAAALASVLCSSVLSIWMCREGLLLSHRLGPALVPLHRLPRTLDARIARLAQYRAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MQRWKAAALASVLCSSVLSIWMCREGLLLSHRLGPALVPLHRLPRTLDARIARLAQYRAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARPCGLRELEVRVSELGLGYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARPCGLRELEVRVSELGLGYA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 SDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVSFLDAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVSFLDAH 130 140 150 160 170 180 190 pF1KE5 SRYHTVHELSARECACV ::::::::::::::::: CCDS12 SRYHTVHELSARECACV 190 >>CCDS75237.1 GDNF gene_id:2668|Hs108|chr5 (159 aa) initn: 322 init1: 156 opt: 336 Z-score: 365.7 bits: 74.2 E(32554): 4.7e-14 Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (87-197:46-159) 60 70 80 90 100 110 pF1KE5 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV :.:. :...: : : : : ... : CCDS75 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE5 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED ..::::: . : ..::::.:.:.:: .:: :. : . ::: ..: .: :::: :..: CCDS75 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD 80 90 100 110 120 130 180 190 pF1KE5 EVSFLDAHSRYHTVHELSARECACV ..:::: . :: ... ::..:.:. CCDS75 DLSFLDDNLVYHILRKHSAKRCGCI 140 150 >>CCDS3923.1 GDNF gene_id:2668|Hs108|chr5 (185 aa) initn: 322 init1: 156 opt: 336 Z-score: 364.9 bits: 74.3 E(32554): 5.3e-14 Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (87-197:72-185) 60 70 80 90 100 110 pF1KE5 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV :.:. :...: : : : : ... : CCDS39 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED ..::::: . : ..::::.:.:.:: .:: :. : . ::: ..: .: :::: :..: CCDS39 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD 110 120 130 140 150 160 180 190 pF1KE5 EVSFLDAHSRYHTVHELSARECACV ..:::: . :: ... ::..:.:. CCDS39 DLSFLDDNLVYHILRKHSAKRCGCI 170 180 >>CCDS54846.1 GDNF gene_id:2668|Hs108|chr5 (202 aa) initn: 324 init1: 156 opt: 336 Z-score: 364.4 bits: 74.3 E(32554): 5.6e-14 Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (87-197:89-202) 60 70 80 90 100 110 pF1KE5 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV :.:. :...: : : : : ... : CCDS54 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED ..::::: . : ..::::.:.:.:: .:: :. : . ::: ..: .: :::: :..: CCDS54 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD 120 130 140 150 160 170 180 190 pF1KE5 EVSFLDAHSRYHTVHELSARECACV ..:::: . :: ... ::..:.:. CCDS54 DLSFLDDNLVYHILRKHSAKRCGCI 180 190 200 >>CCDS3922.1 GDNF gene_id:2668|Hs108|chr5 (211 aa) initn: 321 init1: 156 opt: 336 Z-score: 364.2 bits: 74.3 E(32554): 5.8e-14 Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (87-197:98-211) 60 70 80 90 100 110 pF1KE5 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV :.:. :...: : : : : ... : CCDS39 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED ..::::: . : ..::::.:.:.:: .:: :. : . ::: ..: .: :::: :..: CCDS39 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD 130 140 150 160 170 180 180 190 pF1KE5 EVSFLDAHSRYHTVHELSARECACV ..:::: . :: ... ::..:.:. CCDS39 DLSFLDDNLVYHILRKHSAKRCGCI 190 200 210 >>CCDS54845.1 GDNF gene_id:2668|Hs108|chr5 (228 aa) initn: 321 init1: 156 opt: 336 Z-score: 363.8 bits: 74.3 E(32554): 6.1e-14 Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (87-197:115-228) 60 70 80 90 100 110 pF1KE5 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV :.:. :...: : : : : ... : CCDS54 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV 90 100 110 120 130 140 120 130 140 150 160 170 pF1KE5 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED ..::::: . : ..::::.:.:.:: .:: :. : . ::: ..: .: :::: :..: CCDS54 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD 150 160 170 180 190 200 180 190 pF1KE5 EVSFLDAHSRYHTVHELSARECACV ..:::: . :: ... ::..:.:. CCDS54 DLSFLDDNLVYHILRKHSAKRCGCI 210 220 >>CCDS501.1 ARTN gene_id:9048|Hs108|chr1 (220 aa) initn: 353 init1: 159 opt: 330 Z-score: 357.6 bits: 73.2 E(32554): 1.3e-13 Smith-Waterman score: 330; 41.1% identity (53.1% similar) in 207 aa overlap (4-197:24-219) 10 20 30 pF1KE5 MQRWKA-AALASVLCSSVLSIWMCREGLLLSHRLGPALV- : . :::: : ::: . . : :: : CCDS50 MELGLGGLSTLSHCPWPRQQPALWPTLAALA--LLSSVAEASLGSAPRSPAPREGPPPVL 10 20 30 40 50 40 50 60 70 80 90 pF1KE5 --PLHRLPRTLDARIARLAQYRALLQGAPDAMELRELTPWAGRPPG--PR----RRAGPR : .:: .: :: . :: : . : : . ::. :: ::: CCDS50 ASPAGHLP---GGRTARWCSGRAR---RPPPQPSRPAPPPPA-PPSALPRGGRAARAGGP 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE5 RRRARARLGARPCGLRELEVRVSELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQ :::: ::: : :: : : ::::. ::: : ::.:.:.:. : .::.: : CCDS50 GSRARAA-GARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG 120 130 140 150 160 170 160 170 180 190 pF1KE5 RRRLRRE---RVRAQPCCRPTAYEDEVSFLDAHSRYHTVHELSARECACV :: : .::::::: :: :::.:..: ..:: .::: :.:. CCDS50 AGALRPPPGSRPVSQPCCRPTRYE-AVSFMDVNSTWRTVDRLSATACGCLG 180 190 200 210 220 >>CCDS502.1 ARTN gene_id:9048|Hs108|chr1 (228 aa) initn: 353 init1: 159 opt: 330 Z-score: 357.5 bits: 73.2 E(32554): 1.4e-13 Smith-Waterman score: 330; 41.1% identity (53.1% similar) in 207 aa overlap (4-197:32-227) 10 20 30 pF1KE5 MQRWKA-AALASVLCSSVLSIWMCREGLLLSHR : . :::: : ::: . . : CCDS50 ELGLGGLSTLSHCPWPRQQAPLGLSAQPALWPTLAALA--LLSSVAEASLGSAPRSPAPR 10 20 30 40 50 40 50 60 70 80 pF1KE5 LGPALV---PLHRLPRTLDARIARLAQYRALLQGAPDAMELRELTPWAGRPPG--PR--- :: : : .:: .: :: . :: : . : : . ::. :: CCDS50 EGPPPVLASPAGHLP---GGRTARWCSGRAR---RPPPQPSRPAPPPPA-PPSALPRGGR 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE5 -RRAGPRRRRARARLGARPCGLRELEVRVSELGLGYASDETVLFRYCAGACEAAARVYDL ::: :::: ::: : :: : : ::::. ::: : ::.:.:.:. : .:: CCDS50 AARAGGPGSRARAA-GARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDL 120 130 140 150 160 170 150 160 170 180 190 pF1KE5 GLRRLRQRRRLRRE---RVRAQPCCRPTAYEDEVSFLDAHSRYHTVHELSARECACV .: : :: : .::::::: :: :::.:..: ..:: .::: :.:. CCDS50 SLASLLGAGALRPPPGSRPVSQPCCRPTRYE-AVSFMDVNSTWRTVDRLSATACGCLG 180 190 200 210 220 >>CCDS12164.1 PSPN gene_id:5623|Hs108|chr19 (156 aa) initn: 323 init1: 168 opt: 298 Z-score: 325.7 bits: 66.8 E(32554): 8e-12 Smith-Waterman score: 298; 46.8% identity (68.5% similar) in 111 aa overlap (88-196:50-154) 60 70 80 90 100 110 pF1KE5 RALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLG-ARPCGLRELEVRVSELG : .: :: : . . :: : : . :.::: CCDS12 QGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRRALSGPCQLWSLTLSVAELG 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE5 LGYASDETVLFRYCAGACEAAARV-YDLGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVS :::::.: :.::::::.: .::. . :.: ::. . : ... :::::: : : :. CCDS12 LGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQGR-----AHGGPCCRPTRYTD-VA 80 90 100 110 120 130 180 190 pF1KE5 FLDAHSRYHTVHELSARECACV ::: . :.. . .::: :.: CCDS12 FLDDRHRWQRLPQLSAAACGCGG 140 150 197 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:35:26 2016 done: Tue Nov 8 04:35:26 2016 Total Scan time: 2.350 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]