(Circular) (Six-base) MAPSORT of: pFN21AE1657.seq Check: 2365 from: 1 to: 5224 pFN21AE1657 5224 bp With 182 enzymes: SgfI * August 16, 2010 14:48 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2285 2285 Size: 5224 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3034 278 Size: 53 83 186 936 1498 2468 Fragments arranged by size: 2468 1498 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2567 1937 Size: 630 4594 Acc65I G'GTAC_C Cuts at: 2545 2545 Size: 5224 AclI AA'CG_TT Cuts at: 1563 3351 3724 1563 Size: 1788 373 3063 Fragments arranged by size: 3063 1788 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3287 4671 4939 1632 Size: 1655 1384 268 1917 Fragments arranged by size: 1917 1655 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5027 AflIII A'CryG_T Cuts at: 1203 2189 4123 5100 1203 Size: 986 1934 977 1327 Fragments arranged by size: 1934 1327 986 977 AgeI A'CCGG_T Cuts at: 4055 4055 Size: 5224 AhdI GACnn_n'nnGTC Cuts at: 3953 3953 Size: 5224 AleI CACnn'nnGTG Cuts at: 1166 2114 1166 Size: 948 4276 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5224 AlwNI CAG_nnn'CTG Cuts at: 2967 4539 2967 Size: 1572 3652 ApaI G_GGCC'C Cuts at: 2174 2174 Size: 5224 ApaLI G'TGCA_C Cuts at: 3281 4437 3281 Size: 1156 4068 ApoI r'AATT_y Cuts at: 1493 2423 2533 2759 2911 5020 1493 Size: 930 110 226 152 2109 1697 Fragments arranged by size: 2109 1697 930 226 152 110 AseI AT'TA_AT Cuts at: 160 1032 3778 160 Size: 872 2746 1606 Fragments arranged by size: 2746 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5224 AvaI C'yCGr_G Cuts at: 1870 1943 2173 2459 2549 1870 Size: 73 230 286 90 4545 Fragments arranged by size: 4545 286 230 90 73 AvrII C'CTAG_G Cuts at: 2065 2065 Size: 5224 BamHI G'GATC_C Cuts at: 2554 2921 2554 Size: 367 4857 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2011 2545 4000 618 Size: 325 217 627 224 534 1455 1842 Fragments arranged by size: 1842 1455 627 534 325 224 217 BanII G_rGCy'C Cuts at: 1391 2109 2174 2543 1391 Size: 718 65 369 4072 Fragments arranged by size: 4072 718 369 65 BbeI G_GCGC'C Cuts at: 2015 2015 Size: 5224 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2265 928 Size: 971 366 3887 Fragments arranged by size: 3887 971 366 BbvCI CC'TCA_GC Cuts at: 2081 2081 Size: 5224 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3415 3449 1903 Size: 34 1478 34 3678 Fragments arranged by size: 3678 1478 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3116 4326 3116 Size: 1210 4014 BclI T'GATC_A Cuts at: 1548 1548 Size: 5224 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2009 3835 136 Size: 107 122 71 631 605 337 1826 1525 Fragments arranged by size: 1826 1525 631 605 337 122 107 71 BglII A'GATC_T Cuts at: 5219 5219 Size: 5224 BlpI GC'TnA_GC Cuts at: 2475 2641 2475 Size: 166 5058 Bme1580I G_kGCm'C Cuts at: 1790 2174 3285 4441 1790 Size: 384 1111 1156 2573 Fragments arranged by size: 2573 1156 1111 384 BmgBI CAC'GTC Cuts at: 1318 2128 1318 Size: 810 4414 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2955 3913 442 Size: 416 53 83 399 24 1538 958 1753 Fragments arranged by size: 1753 1538 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5224 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2308 3884 1239 Size: 1069 1576 2579 Fragments arranged by size: 2579 1576 1069 Bpu10I CC'TnA_GC Cuts at: 2081 2081 Size: 5224 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2196 3349 4214 4512 2196 Size: 1153 865 298 2908 Fragments arranged by size: 2908 1153 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3887 882 Size: 617 2388 2219 Fragments arranged by size: 2388 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2190 3015 493 Size: 711 986 825 2702 Fragments arranged by size: 2702 986 825 711 BsaBI GATnn'nnATC Cuts at: 5218 5218 Size: 5224 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2012 2034 2142 3031 Size: 53 83 186 936 479 22 108 889 Cuts at: 3031 3413 4048 275 Size: 382 635 1451 Fragments arranged by size: 1451 936 889 635 479 382 186 108 83 53 22 BsaWI w'CCGG_w Cuts at: 3657 4055 4329 4476 4887 3657 Size: 398 274 147 411 3994 Fragments arranged by size: 3994 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2084 2114 1178 Size: 30 165 30 681 30 4288 Fragments arranged by size: 4288 681 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5224 BseYI C'CCAG_C Cuts at: 2015 4427 4923 2015 Size: 2412 496 2316 Fragments arranged by size: 2412 2316 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2263 1163 Size: 573 527 4124 Fragments arranged by size: 4124 573 527 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2674 3435 4463 1540 Size: 275 186 673 761 1028 2301 Fragments arranged by size: 2301 1028 761 673 275 186 BsiHKAI G_wGCw'C Cuts at: 3285 3370 4441 3285 Size: 85 1071 4068 Fragments arranged by size: 4068 1071 85 BsmI GAATG_Cn' Cuts at: 2149 2465 2735 2828 2149 Size: 316 270 93 4545 Fragments arranged by size: 4545 316 270 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2109 2174 2543 3285 3370 4441 1391 Size: 399 319 65 369 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 369 319 85 65 BspEI T'CCGG_A Cuts at: 4887 4887 Size: 5224 BspHI T'CATG_A Cuts at: 3113 4843 3113 Size: 1730 3494 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2285 2579 844 Size: 1441 294 3489 Fragments arranged by size: 3489 1441 294 BsrBI CCG'CTC Cuts at: 1394 1823 3111 1394 Size: 429 1288 3507 Fragments arranged by size: 3507 1288 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2237 3719 3893 65 Size: 1183 989 1482 174 1396 Fragments arranged by size: 1482 1396 1183 989 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2086 3868 4055 1700 Size: 110 276 1782 187 2869 Fragments arranged by size: 2869 1782 276 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5224 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5224 BssSI C'ACGA_G Cuts at: 3284 4296 3284 Size: 1012 4212 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5224 BstBI TT'CG_AA Cuts at: 4028 4028 Size: 5224 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5224 BstXI CCAn_nnnn'nTGG Cuts at: 2116 2116 Size: 5224 BstYI r'GATC_y Cuts at: 1972 2554 2921 3306 3323 4775 4861 4873 5219 Size: 582 367 385 17 1452 86 12 346 Cuts at: 5219 1972 Size: 1977 Fragments arranged by size: 1977 1452 582 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2073 2364 513 Size: 552 939 69 291 3373 Fragments arranged by size: 3373 939 552 291 69 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2493 487 Size: 683 56 1267 3218 Fragments arranged by size: 3218 1267 683 56 BtsI GCAGTG_nn' Cuts at: 2451 2740 3534 3554 2451 Size: 289 794 20 4121 Fragments arranged by size: 4121 794 289 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5224 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5189 DraI TTT'AAA Cuts at: 2528 2528 Size: 5224 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4231 809 Size: 507 2915 1802 Fragments arranged by size: 2915 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2499 2671 3560 Size: 54 1425 50 275 18 669 172 889 Cuts at: 3560 5189 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 669 275 172 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2671 1537 Size: 275 859 4090 Fragments arranged by size: 4090 859 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3154 1353 Size: 1801 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2105 3811 4185 4331 387 Size: 1064 138 516 1706 374 146 1280 Fragments arranged by size: 1706 1280 1064 516 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2308 3287 3884 4671 4939 1239 Size: 393 676 979 597 787 268 1524 Fragments arranged by size: 1524 979 787 676 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2292 2292 Size: 5224 EcoRI G'AATT_C Cuts at: 2533 2911 2533 Size: 378 4846 FspI TGC'GCA Cuts at: 3730 3730 Size: 5224 HaeII r_GCGC'y Cuts at: 1678 2015 2081 2349 4371 1678 Size: 337 66 268 2022 2531 Fragments arranged by size: 2531 2022 337 268 66 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2084 2116 3865 3897 3939 Size: 32 135 32 512 32 1749 32 42 Cuts at: 3939 3971 1373 Size: 32 2626 Fragments arranged by size: 2626 1749 512 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2568 2814 669 Size: 988 281 630 246 3079 Fragments arranged by size: 3079 988 630 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5224 HpaI GTT'AAC Cuts at: 2814 2814 Size: 5224 KasI G'GCGC_C Cuts at: 2011 2011 Size: 5224 KpnI G_GTAC'C Cuts at: 2549 2549 Size: 5224 MfeI C'AATT_G Cuts at: 2823 2823 Size: 5224 MluI A'CGCG_T Cuts at: 5100 5100 Size: 5224 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4338 4522 1305 Size: 3033 184 2007 Fragments arranged by size: 3033 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2501 10 Size: 54 1425 343 669 2733 Fragments arranged by size: 2733 1425 669 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2114 3182 3541 3700 518 Size: 648 948 1068 359 159 2042 Fragments arranged by size: 2042 1068 948 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2019 2640 3317 4465 4710 1606 Size: 413 621 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 621 413 245 NaeI GCC'GGC Cuts at: 2088 2088 Size: 5224 NarI GG'CG_CC Cuts at: 2012 2012 Size: 5224 NcoI C'CATG_G Cuts at: 513 1065 2004 2364 513 Size: 552 939 360 3373 Fragments arranged by size: 3373 939 552 360 NdeI CA'TA_TG Cuts at: 387 387 Size: 5224 NgoMIV G'CCGG_C Cuts at: 2086 2086 Size: 5224 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5224 NotI GC'GGCC_GC Cuts at: 2671 2671 Size: 5224 NspI r_CATG'y Cuts at: 1132 1229 2582 4127 1132 Size: 97 1353 1545 2229 Fragments arranged by size: 2229 1545 1353 97 PasI CC'CwG_GG Cuts at: 1348 2296 1348 Size: 948 4276 PciI A'CATG_T Cuts at: 4123 4123 Size: 5224 PflMI CCAn_nnn'nTGG Cuts at: 1108 2167 1108 Size: 1059 4165 PmeI GTTT'AAAC Cuts at: 2528 2528 Size: 5224 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3293 3325 4806 4838 3293 Size: 32 1481 32 3679 Fragments arranged by size: 3679 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5224 PsiI TTA'TAA Cuts at: 2794 2794 Size: 5224 PspOMI G'GGCC_C Cuts at: 2170 2170 Size: 5224 PstI C_TGCA'G Cuts at: 830 2576 830 Size: 1746 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5224 SalI G'TCGA_C Cuts at: 1936 2566 1936 Size: 630 4594 SbfI CC_TGCA'GG Cuts at: 2576 2576 Size: 5224 ScaI AGT'ACT Cuts at: 3472 5184 3472 Size: 1712 3512 SfcI C'TryA_G Cuts at: 826 1045 2572 3707 4388 4579 826 Size: 219 1527 1135 681 191 1471 Fragments arranged by size: 1527 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2013 2013 Size: 5224 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5224 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5224 SmaI CCC'GGG Cuts at: 1872 2175 2461 2551 1872 Size: 303 286 90 4545 Fragments arranged by size: 4545 303 286 90 SmlI C'TyrA_G Cuts at: 820 1017 1943 2211 3328 4229 4491 820 Size: 197 926 268 1117 901 262 1553 Fragments arranged by size: 1553 1117 926 901 268 262 197 SnaBI TAC'GTA Cuts at: 493 3015 493 Size: 2522 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5224 SphI G_CATG'C Cuts at: 1132 2582 1132 Size: 1450 3774 SspI AAT'ATT Cuts at: 5 52 3148 5 Size: 47 3096 2081 Fragments arranged by size: 3096 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5224 StyI C'CwwG_G Cuts at: 513 1065 2004 2065 2364 2502 2663 513 Size: 552 939 61 299 138 161 3074 Fragments arranged by size: 3074 939 552 299 161 138 61 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3251 3268 3421 3606 4051 325 Size: 1255 1671 17 153 185 445 1498 Fragments arranged by size: 1671 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2313 3470 5182 Size: 274 80 33 51 1443 336 1157 1712 Cuts at: 5182 96 Size: 138 Fragments arranged by size: 1712 1443 1157 336 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5184 5216 5184 Size: 32 5192 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5224 XbaI T'CTAG_A Cuts at: 2560 2560 Size: 5224 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2443 2443 Size: 5224 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5224 XmaI C'CCGG_G Cuts at: 1870 2173 2459 2549 1870 Size: 303 286 90 4545 Fragments arranged by size: 4545 303 286 90 XmnI GAAnn'nnTTC Cuts at: 3353 3353 Size: 5224 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3032 276 Size: 53 83 186 936 1498 2468 Fragments arranged by size: 2468 1498 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI BaeI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI