FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8883, 184 aa 1>>>pF1KB8883 184 - 184 aa - 184 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5933+/-0.000733; mu= 6.2023+/- 0.045 mean_var=229.2550+/-47.163, 0's: 0 Z-trim(117.6): 170 B-trim: 6 in 1/52 Lambda= 0.084706 statistics sampled from 18136 (18327) to 18136 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.563), width: 16 Scan time: 2.440 The best scores are: opt bits E(32554) CCDS12112.1 RAX2 gene_id:84839|Hs108|chr19 ( 184) 1287 168.4 2.2e-42 CCDS11972.1 RAX gene_id:30062|Hs108|chr18 ( 346) 535 76.8 1.6e-14 >>CCDS12112.1 RAX2 gene_id:84839|Hs108|chr19 (184 aa) initn: 1287 init1: 1287 opt: 1287 Z-score: 874.2 bits: 168.4 E(32554): 2.2e-42 Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KB8 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA 130 140 150 160 170 180 pF1KB8 WPPA :::: CCDS12 WPPA >>CCDS11972.1 RAX gene_id:30062|Hs108|chr18 (346 aa) initn: 664 init1: 444 opt: 535 Z-score: 374.4 bits: 76.8 E(32554): 1.6e-14 Smith-Waterman score: 550; 55.6% identity (66.9% similar) in 178 aa overlap (4-155:112-283) 10 20 30 pF1KB8 MFLSPGE--GPATEGGGLGPGEEAPKKKHRRNR ::: :::: . :. :: ::::::::: CCDS11 EPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSE-EEQPKKKHRRNR 90 100 110 120 130 140 40 50 60 70 80 90 pF1KB8 TTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESG :::::::::.:::::: :::::::::::::.::.:::::::::::::::::::::.:: CCDS11 TTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLE-- 150 160 170 180 190 100 110 120 pF1KB8 SGAVAAPRLPEAPALPFAR-PPAMSL------------------PLEPWLGP-----GPP :.. .: ..: : :.: ::. .: ::: :::: : CCDS11 ---VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGAT 200 210 220 230 240 250 130 140 150 160 170 180 pF1KB8 AVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA :. .:: . :. .: ::. : : : CCDS11 ALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPL 260 270 280 290 300 310 184 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:20:31 2016 done: Tue Nov 8 04:20:32 2016 Total Scan time: 2.440 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]