FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1763, 269 aa 1>>>pF1KE1763 269 - 269 aa - 269 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3790+/-0.000673; mu= 15.4326+/- 0.041 mean_var=71.6770+/-14.511, 0's: 0 Z-trim(110.9): 10 B-trim: 0 in 0/51 Lambda= 0.151490 statistics sampled from 11933 (11937) to 11933 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.367), width: 16 Scan time: 2.510 The best scores are: opt bits E(32554) CCDS45897.1 GAMT gene_id:2593|Hs108|chr19 ( 269) 1907 425.3 2.3e-119 CCDS12064.1 GAMT gene_id:2593|Hs108|chr19 ( 236) 1334 300.0 1e-81 >>CCDS45897.1 GAMT gene_id:2593|Hs108|chr19 (269 aa) initn: 1907 init1: 1907 opt: 1907 Z-score: 2256.5 bits: 425.3 E(32554): 2.3e-119 Smith-Waterman score: 1907; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269) 10 20 30 40 50 60 pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK 190 200 210 220 230 240 250 260 pF1KE1 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA ::::::::::::::::::::::::::::: CCDS45 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA 250 260 >>CCDS12064.1 GAMT gene_id:2593|Hs108|chr19 (236 aa) initn: 1333 init1: 1333 opt: 1334 Z-score: 1580.6 bits: 300.0 E(32554): 1e-81 Smith-Waterman score: 1334; 97.5% identity (98.0% similar) in 197 aa overlap (1-197:1-195) 10 20 30 40 50 60 pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK :::::::::: .:: CCDS12 KYSDITIMFE--ETQVPALLEAGFRRENIRTEVMALVPPADCRYYAFPQMITPLVTKG 190 200 210 220 230 269 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:36:22 2016 done: Sun Nov 6 13:36:22 2016 Total Scan time: 2.510 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]