FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1863, 382 aa 1>>>pF1KE1863 382 - 382 aa - 382 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.3743+/-0.000401; mu= -20.3626+/- 0.025 mean_var=418.7556+/-84.596, 0's: 0 Z-trim(124.2): 4 B-trim: 24 in 1/61 Lambda= 0.062675 statistics sampled from 45412 (45421) to 45412 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.533), width: 16 Scan time: 11.130 The best scores are: opt bits E(85289) NP_570116 (OMIM: 102670) mucosal addressin cell ad ( 382) 2586 247.4 4.2e-65 NP_570118 (OMIM: 102670) mucosal addressin cell ad ( 295) 1483 147.6 3.6e-35 >>NP_570116 (OMIM: 102670) mucosal addressin cell adhesi (382 aa) initn: 2586 init1: 2586 opt: 2586 Z-score: 1289.7 bits: 247.4 E(85289): 4.2e-65 Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382) 10 20 30 40 50 60 pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR 310 320 330 340 350 360 370 380 pF1KE1 LLPQVSAWAGLRGTGQVGISPS :::::::::::::::::::::: NP_570 LLPQVSAWAGLRGTGQVGISPS 370 380 >>NP_570118 (OMIM: 102670) mucosal addressin cell adhesi (295 aa) initn: 1961 init1: 1479 opt: 1483 Z-score: 752.4 bits: 147.6 E(85289): 3.6e-35 Smith-Waterman score: 1791; 77.0% identity (77.2% similar) in 382 aa overlap (1-382:1-295) 10 20 30 40 50 60 pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES :::::::::::::::::::::::::::::::::::::::::: NP_570 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP------------------ 190 200 210 220 250 260 270 280 290 300 pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP NP_570 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR .:::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 ---------ASKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR 230 240 250 260 270 370 380 pF1KE1 LLPQVSAWAGLRGTGQVGISPS :::::::::::::::::::::: NP_570 LLPQVSAWAGLRGTGQVGISPS 280 290 382 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:38:26 2016 done: Sun Nov 6 13:38:28 2016 Total Scan time: 11.130 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]