FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6270, 192 aa 1>>>pF1KE6270 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1226+/-0.000957; mu= 13.5012+/- 0.057 mean_var=54.6126+/-10.924, 0's: 0 Z-trim(103.3): 19 B-trim: 0 in 0/50 Lambda= 0.173551 statistics sampled from 7332 (7342) to 7332 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.226), width: 16 Scan time: 1.690 The best scores are: opt bits E(32554) CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 ( 192) 1258 323.0 7e-89 CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 ( 161) 1032 266.4 6.5e-72 CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 ( 179) 985 254.6 2.5e-68 CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 ( 153) 870 225.8 1e-59 CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 ( 164) 821 213.6 5.3e-56 CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 ( 185) 813 211.6 2.3e-55 CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 ( 129) 424 114.1 3.6e-26 >>CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 (192 aa) initn: 1258 init1: 1258 opt: 1258 Z-score: 1709.2 bits: 323.0 E(32554): 7e-89 Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 130 140 150 160 170 180 190 pF1KE6 VMGAYVLLKRES :::::::::::: CCDS11 VMGAYVLLKRES 190 >>CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 (161 aa) initn: 1051 init1: 1032 opt: 1032 Z-score: 1404.6 bits: 266.4 E(32554): 6.5e-72 Smith-Waterman score: 1032; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA ::::::::::::::::::::::::::::::::::::.: CCDS77 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGMLFWL 130 140 150 160 190 pF1KE6 VMGAYVLLKRES >>CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 (179 aa) initn: 985 init1: 985 opt: 985 Z-score: 1340.3 bits: 254.6 E(32554): 2.5e-68 Smith-Waterman score: 985; 80.7% identity (96.0% similar) in 176 aa overlap (16-191:4-179) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP ::.. :...:::::::::::::.:::::::::::::.:.:::::: CCDS45 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP 10 20 30 40 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD ::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.:: CCDS45 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA :::::::::: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.: CCDS45 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF 110 120 130 140 150 160 190 pF1KE6 VMGAYVLLKRES ..: .::..:: CCDS45 LLGLFVLVHRE 170 >>CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 (153 aa) initn: 870 init1: 870 opt: 870 Z-score: 1185.7 bits: 225.8 E(32554): 1e-59 Smith-Waterman score: 870; 82.4% identity (96.1% similar) in 153 aa overlap (39-191:1-153) 10 20 30 40 50 60 pF1KE6 AHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGS :::::::::::::.:.:::::::::::::: CCDS61 MIVSSALMIWKGLMVITGSESPIVVVLSGS 10 20 30 70 80 90 100 110 120 pF1KE6 MEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGD ::::::::::::::: :::::.::::::..:::.:::::::.:.:::.:: :::::::: CCDS61 MEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 NNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLL :: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.: ..: .::. CCDS61 NNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLV 100 110 120 130 140 150 190 pF1KE6 KRES .:: CCDS61 HRE >>CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 (164 aa) initn: 821 init1: 821 opt: 821 Z-score: 1118.9 bits: 213.6 E(32554): 5.3e-56 Smith-Waterman score: 821; 84.5% identity (96.5% similar) in 142 aa overlap (16-157:4-145) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP ::.. :...:::::::::::::.:::::::::::::.:.:::::: CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP 10 20 30 40 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD ::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.:: CCDS61 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA :::::::::: ::::::::.::.:::::::::::::: CCDS61 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFYQENSSVEDRNYLFLILEL 110 120 130 140 150 160 190 pF1KE6 VMGAYVLLKRES >>CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 (185 aa) initn: 813 init1: 813 opt: 813 Z-score: 1107.3 bits: 211.6 E(32554): 2.3e-55 Smith-Waterman score: 813; 84.4% identity (96.5% similar) in 141 aa overlap (16-156:4-144) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP ::.. :...:::::::::::::.:::::::::::::.:.:::::: CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP 10 20 30 40 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD ::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.:: CCDS61 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA :::::::::: ::::::::.::.::::::::::::: CCDS61 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGMQFSFCWVYSCWFIVSKKPALLFL 110 120 130 140 150 160 190 pF1KE6 VMGAYVLLKRES CCDS61 GRCHSFRYWMFGVDTGL 170 180 >>CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 (129 aa) initn: 674 init1: 417 opt: 424 Z-score: 583.4 bits: 114.1 E(32554): 3.6e-26 Smith-Waterman score: 578; 56.2% identity (68.8% similar) in 176 aa overlap (16-191:4-129) 10 20 30 40 50 60 pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP ::.. :...:::::::::::::.:::::::::::::.:.:::::: CCDS73 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP 10 20 30 40 70 80 90 100 110 120 pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD ::::: ..:: CCDS73 IVVVL--------------------------------------------------RQNGH 50 130 140 150 160 170 180 pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA :::::::::: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.: CCDS73 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF 60 70 80 90 100 110 190 pF1KE6 VMGAYVLLKRES ..: .::..:: CCDS73 LLGLFVLVHRE 120 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:39:25 2016 done: Tue Nov 8 11:39:25 2016 Total Scan time: 1.690 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]