FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4025, 232 aa 1>>>pF1KE4025 232 - 232 aa - 232 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3602+/-0.000977; mu= 5.1741+/- 0.058 mean_var=183.2579+/-40.325, 0's: 0 Z-trim(110.3): 107 B-trim: 445 in 1/50 Lambda= 0.094742 statistics sampled from 11390 (11505) to 11390 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.353), width: 16 Scan time: 1.970 The best scores are: opt bits E(32554) CCDS11902.1 RNF125 gene_id:54941|Hs108|chr18 ( 232) 1618 233.0 1.3e-61 >>CCDS11902.1 RNF125 gene_id:54941|Hs108|chr18 (232 aa) initn: 1618 init1: 1618 opt: 1618 Z-score: 1219.9 bits: 233.0 E(32554): 1.3e-61 Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE4 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT 190 200 210 220 230 232 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:20:08 2016 done: Sun Nov 6 04:20:08 2016 Total Scan time: 1.970 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]