FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3981, 257 aa 1>>>pF1KE3981 257 - 257 aa - 257 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6904+/-0.000738; mu= 12.4205+/- 0.044 mean_var=64.6432+/-12.921, 0's: 0 Z-trim(107.8): 64 B-trim: 58 in 2/52 Lambda= 0.159519 statistics sampled from 9740 (9806) to 9740 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.301), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 1740 408.9 1.8e-114 CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 1418 334.8 3.9e-92 CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 1167 277.0 8e-75 CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 359 91.1 7.7e-19 CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 338 86.2 2.4e-17 CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 288 74.7 6.9e-14 CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 ( 229) 253 66.7 1.6e-11 CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 ( 272) 253 66.7 1.9e-11 >>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa) initn: 1740 init1: 1740 opt: 1740 Z-score: 2168.8 bits: 408.9 E(32554): 1.8e-114 Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSSQFSEYVLRRELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSSQFSEYVLRRELR 190 200 210 220 230 240 250 pF1KE3 RTPRVPSVIRIKQEPLD ::::::::::::::::: CCDS11 RTPRVPSVIRIKQEPLD 250 >>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa) initn: 1418 init1: 1418 opt: 1418 Z-score: 1767.6 bits: 334.8 E(32554): 3.9e-92 Smith-Waterman score: 1418; 79.8% identity (92.6% similar) in 257 aa overlap (1-257:27-283) 10 20 30 pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI ::: .::::.::: :::: ::::::::::::: CCDS46 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS ::::::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.::::: CCDS46 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER :::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.:::::: CCDS46 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG :.:::.:.:::::::: :::::::::::::.: ::::::::::::.:::::::::: ::: CCDS46 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQVLERLFQRG 190 200 210 220 230 240 220 230 240 250 pF1KE3 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD : ...:::::::::::::::: :: :: .:...:::::::: CCDS46 FSVAASCGGGVDSSQFSEYVLCREERRPQPTPTAVRIKQEPLD 250 260 270 280 >>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa) initn: 1167 init1: 1167 opt: 1167 Z-score: 1456.8 bits: 277.0 E(32554): 8e-75 Smith-Waterman score: 1167; 81.5% identity (94.1% similar) in 205 aa overlap (1-205:27-231) 10 20 30 pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI ::: .::::.::: :::: ::::::::::::: CCDS12 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS ::::::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.::::: CCDS12 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER :::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.:::::: CCDS12 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG :.:::.:.:::::::: :::::::::::::.: ::::::::::::.::::: CCDS12 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQDVL 190 200 210 220 230 220 230 240 250 pF1KE3 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD >>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa) initn: 356 init1: 217 opt: 359 Z-score: 451.7 bits: 91.1 E(32554): 7.7e-19 Smith-Waterman score: 359; 33.7% identity (59.7% similar) in 196 aa overlap (31-217:13-205) 10 20 30 40 50 60 pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF :: ..::::.::.::.:::.::.: .: .: CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF 10 20 30 40 70 80 90 100 110 120 pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM : : . : . .::::::: .:::.:::::::.: .: :::.. :: .:: ..:..:. CCDS28 GGDFPTARDP-QGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPL 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN . .. : : . : .: .. ... . : . . . : . CCDS28 IQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFT 110 120 130 140 150 160 190 200 210 220 230 pF1KE3 AGWNH---DSTHV-IRFPLNGYCHLNS-----VQVLERLQQRGFEIVGSCGGGVDSSQFS ::. :. . : . : : .. :...: . ..:: : CCDS28 K-WNKHMMDTRDCQVSFTF-GPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANE 170 180 190 200 210 240 250 pF1KE3 EYVLRRELRRTPRVPSVIRIKQEPLD CCDS28 NTVEHNWTFCRLARKTDD 220 230 >>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa) initn: 338 init1: 208 opt: 338 Z-score: 424.9 bits: 86.2 E(32554): 2.4e-17 Smith-Waterman score: 338; 50.5% identity (82.1% similar) in 95 aa overlap (31-125:4-97) 10 20 30 40 50 60 pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF :. ..:::..::.::::::..:.: .: .: CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF 10 20 30 70 80 90 100 110 120 pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM .: : :: . . ::::::..:::::::::::.: .:.::... :: .:: ..:.::. CCDS31 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN . .. CCDS31 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS 100 110 120 130 140 150 >>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa) initn: 306 init1: 202 opt: 288 Z-score: 362.8 bits: 74.7 E(32554): 6.9e-14 Smith-Waterman score: 289; 31.9% identity (60.8% similar) in 204 aa overlap (34-222:37-235) 10 20 30 40 50 60 pF1KE3 PLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGT ..:::..: .. ::::::.. . . .: CCDS93 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLE .:. :::::::: .::..:::::...::.:. :.. :: .::..:::. . : CCDS93 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE 70 80 90 100 110 120 130 140 150 160 pF1KE3 ME-RWKQDRETGRFSRPCECLV-------VRV---APD----LGERITLSGDKSLIEEVF .. ::.... : : . : .:. ::: . ::.: . . : . : CCDS93 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL--DGF 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 PEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSS :: .. : .. . : . :. :. . : .:: :. ... .. .:: CCDS93 PEEFSISSNIIQFKYFIKSENGTRLVLKEDNTF--VCTLETLKFEAIMMALKCGFRLLTS 190 200 210 220 230 240 230 240 250 pF1KE3 QFSEYVLRRELRRTPRVPSVIRIKQEPLD CCDS93 LDCSKGSIVHSDALHFIK 250 >>CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 (229 aa) initn: 260 init1: 169 opt: 253 Z-score: 320.1 bits: 66.7 E(32554): 1.6e-11 Smith-Waterman score: 253; 37.8% identity (76.7% similar) in 90 aa overlap (32-121:7-95) 10 20 30 40 50 60 pF1KE3 SRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFD : ..:::...:. ..:. ..: ::..:..: CCDS41 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLD 10 20 30 70 80 90 100 110 120 pF1KE3 GTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPML : . . . . :.::::..: .::.:::: .::.: .:.:: : .:: ...:. .. CCDS41 GRDQ-EFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 LEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNA CCDS41 DLLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGN 100 110 120 130 140 150 >>CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 (272 aa) initn: 248 init1: 157 opt: 253 Z-score: 318.9 bits: 66.7 E(32554): 1.9e-11 Smith-Waterman score: 253; 37.8% identity (76.7% similar) in 90 aa overlap (32-121:7-95) 10 20 30 40 50 60 pF1KE3 SRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFD : ..:::...:. ..:. ..: ::..:..: CCDS94 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLD 10 20 30 70 80 90 100 110 120 pF1KE3 GTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPML : . . . . :.::::..: .::.:::: .::.: .:.:: : .:: ...:. .. CCDS94 GRDQ-EFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 LEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNA CCDS94 DLLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGN 100 110 120 130 140 150 257 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:23:11 2016 done: Sun Nov 6 08:23:11 2016 Total Scan time: 2.110 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]