FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3216, 493 aa 1>>>pF1KE3216 493 - 493 aa - 493 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9922+/-0.000894; mu= 2.6737+/- 0.055 mean_var=168.0522+/-33.905, 0's: 0 Z-trim(112.5): 11 B-trim: 191 in 1/52 Lambda= 0.098936 statistics sampled from 13265 (13274) to 13265 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.408), width: 16 Scan time: 3.560 The best scores are: opt bits E(32554) CCDS11881.1 CABYR gene_id:26256|Hs108|chr18 ( 493) 3129 458.3 8.7e-129 CCDS11882.1 CABYR gene_id:26256|Hs108|chr18 ( 475) 2715 399.2 5.2e-111 CCDS77166.1 CABYR gene_id:26256|Hs108|chr18 ( 395) 2496 367.9 1.1e-101 CCDS45840.1 CABYR gene_id:26256|Hs108|chr18 ( 221) 1178 179.7 2.9e-45 CCDS42420.1 CABYR gene_id:26256|Hs108|chr18 ( 379) 1173 179.1 7.6e-45 CCDS11883.1 CABYR gene_id:26256|Hs108|chr18 ( 281) 540 88.7 9.2e-18 >>CCDS11881.1 CABYR gene_id:26256|Hs108|chr18 (493 aa) initn: 3129 init1: 3129 opt: 3129 Z-score: 2425.6 bits: 458.3 E(32554): 8.7e-129 Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493) 10 20 30 40 50 60 pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT 430 440 450 460 470 480 490 pF1KE3 APEIEPEGESTAE ::::::::::::: CCDS11 APEIEPEGESTAE 490 >>CCDS11882.1 CABYR gene_id:26256|Hs108|chr18 (475 aa) initn: 2715 init1: 2715 opt: 2715 Z-score: 2106.5 bits: 399.2 E(32554): 5.2e-111 Smith-Waterman score: 2965; 96.3% identity (96.3% similar) in 493 aa overlap (1-493:1-475) 10 20 30 40 50 60 pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK :::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYR------------ 10 20 30 40 70 80 90 100 110 120 pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ------VEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE3 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE 350 360 370 380 390 400 430 440 450 460 470 480 pF1KE3 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT 410 420 430 440 450 460 490 pF1KE3 APEIEPEGESTAE ::::::::::::: CCDS11 APEIEPEGESTAE 470 >>CCDS77166.1 CABYR gene_id:26256|Hs108|chr18 (395 aa) initn: 2496 init1: 2496 opt: 2496 Z-score: 1938.9 bits: 367.9 E(32554): 1.1e-101 Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 395 aa overlap (99-493:1-395) 70 80 90 100 110 120 pF1KE3 KWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAV :::::::::::::::::::::::::::::: CCDS77 MEKSTDTDEDNVTRTEYSDKTTQFPSVYAV 10 20 30 130 140 150 160 170 180 pF1KE3 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE3 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE3 PKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDVPVTEGVVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDVPVTEGVVY 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE3 IEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSVESVKLAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 IEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSVESVKLAQL 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE3 EENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLEVEITSIVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 EENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLEVEITSIVS 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE3 DNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLTAPEIEPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 DNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLTAPEIEPEG 340 350 360 370 380 390 490 pF1KE3 ESTAE ::::: CCDS77 ESTAE >>CCDS45840.1 CABYR gene_id:26256|Hs108|chr18 (221 aa) initn: 1210 init1: 1178 opt: 1178 Z-score: 926.2 bits: 179.7 E(32554): 2.9e-45 Smith-Waterman score: 1178; 95.3% identity (97.4% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS :.. : ..: CCDS45 EDVAKKSSGSGDKCAPFGSYGIAGEVTVTTAHKRRKAETEN 190 200 210 220 >>CCDS42420.1 CABYR gene_id:26256|Hs108|chr18 (379 aa) initn: 1199 init1: 1173 opt: 1173 Z-score: 918.6 bits: 179.1 E(32554): 7.6e-45 Smith-Waterman score: 1173; 97.8% identity (99.5% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS . ..: CCDS42 AMATSERGQPPPCSNMWTLYCLTDKNQQGHPSPPPAPGPFPQATLYLPNPKDPQFQQHPP 190 200 210 220 230 240 >>CCDS11883.1 CABYR gene_id:26256|Hs108|chr18 (281 aa) initn: 566 init1: 540 opt: 540 Z-score: 432.4 bits: 88.7 E(32554): 9.2e-18 Smith-Waterman score: 540; 95.4% identity (98.9% similar) in 87 aa overlap (99-185:1-87) 70 80 90 100 110 120 pF1KE3 KWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAV :::::::::::::::::::::::::::::: CCDS11 MEKSTDTDEDNVTRTEYSDKTTQFPSVYAV 10 20 30 130 140 150 160 170 180 pF1KE3 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS ::::::::::::::::::::::::::::::::::::::::::::::::::::. ..: CCDS11 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERG 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE3 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ CCDS11 QPPPCSNMWTLYCLTDKNQQGHPSPPPAPGPFPQATLYLPNPKDPQFQQHPPKVTFPTYV 100 110 120 130 140 150 493 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:58:14 2016 done: Sun Nov 6 05:58:14 2016 Total Scan time: 3.560 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]