FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3226, 519 aa 1>>>pF1KE3226 519 - 519 aa - 519 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8414+/-0.000897; mu= 16.0383+/- 0.054 mean_var=78.3518+/-15.649, 0's: 0 Z-trim(106.8): 19 B-trim: 160 in 1/49 Lambda= 0.144894 statistics sampled from 9175 (9183) to 9175 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.282), width: 16 Scan time: 3.280 The best scores are: opt bits E(32554) CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18 ( 519) 3484 738.0 6.1e-213 CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6 ( 568) 720 160.2 5.6e-39 >>CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18 (519 aa) initn: 3484 init1: 3484 opt: 3484 Z-score: 3936.5 bits: 738.0 E(32554): 6.1e-213 Smith-Waterman score: 3484; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519) 10 20 30 40 50 60 pF1KE3 MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLAKELQLEEEAAVFPEVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLAKELQLEEEAAVFPEVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARME 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 NFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSARLHEKKEHSTAEKAVDPKTRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSARLHEKKEHSTAEKAVDPKTRLL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 MYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 NRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVW 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEAD 430 440 450 460 470 480 490 500 510 pF1KE3 FLAEIEALEKMNEDHVQKNGRKAASFLKDDGDPPLLYDE ::::::::::::::::::::::::::::::::::::::: CCDS11 FLAEIEALEKMNEDHVQKNGRKAASFLKDDGDPPLLYDE 490 500 510 >>CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6 (568 aa) initn: 872 init1: 673 opt: 720 Z-score: 813.3 bits: 160.2 E(32554): 5.6e-39 Smith-Waterman score: 929; 35.6% identity (69.4% similar) in 438 aa overlap (78-504:6-428) 50 60 70 80 90 100 pF1KE3 QLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDS :...... ..: ... . .. : . CCDS45 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKE- 10 20 30 110 120 130 140 150 160 pF1KE3 KVSISFENYR-KVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKH : .: ::. . .:. ... ..: . : :: . . : ::.. .: . . CCDS45 KDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQAN 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE3 DEVVCGRKNTARMENFAPEF--QVGDGIGMD-LKLSNHVFNALKQHAYSEERRSARLHEK .. . ...:.: . : . . . :..: :.... :.: . ... ..: :...: CCDS45 RQT--SDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSRQKEADMYRIKDK 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE3 KEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVI ...:.:...::.::....::.. :.. :.::::::::. :.:: .. :.. CCDS45 ADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESR------- 160 170 180 190 200 290 300 310 320 330 340 pF1KE3 PTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAG :::..::.. ::.::::.. .:::. . : ::::... ::::::.:: :.. : CCDS45 ----AIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAE 210 220 230 240 250 260 350 360 370 380 390 400 pF1KE3 IPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLV :::: ..:..:.:::::::.:..::: ::.:.:. . .: : :... ::..:.. :: CCDS45 IPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLV 270 280 290 300 310 320 410 420 430 440 450 460 pF1KE3 HADLSEYNMLWHAGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERE ::::::.:::.:.: :..:::::::: :::.:::: .:: ::..::.. .: ... :: CCDS45 HADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFMRHSVA-VMTVRE 330 340 350 360 370 380 470 480 490 500 510 pF1KE3 LFNAVSGLNITADNEADFLAEIEAL-------EKMNEDHVQKNGRKAASFLKDDGDPPLL ::. :. .:: .: .:.. . :. ..:::... : : CCDS45 LFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNY 390 400 410 420 430 440 pF1KE3 YDE CCDS45 ERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQKVPALLENQVEERTCSDSED 450 460 470 480 490 500 519 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:43:35 2016 done: Sun Nov 6 13:43:36 2016 Total Scan time: 3.280 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]