FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3084, 248 aa 1>>>pF1KE3084 248 - 248 aa - 248 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2466+/-0.000329; mu= 15.8478+/- 0.020 mean_var=77.7775+/-15.961, 0's: 0 Z-trim(117.2): 14 B-trim: 2266 in 2/48 Lambda= 0.145428 statistics sampled from 28973 (28985) to 28973 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.34), width: 16 Scan time: 6.700 The best scores are: opt bits E(85289) XP_005256449 (OMIM: 602602) PREDICTED: secreted an ( 248) 1697 364.9 7.2e-101 NP_002995 (OMIM: 602602) secreted and transmembran ( 248) 1697 364.9 7.2e-101 XP_011521890 (OMIM: 602602) PREDICTED: secreted an ( 248) 1697 364.9 7.2e-101 >>XP_005256449 (OMIM: 602602) PREDICTED: secreted and tr (248 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 1931.9 bits: 364.9 E(85289): 7.2e-101 Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP 190 200 210 220 230 240 pF1KE3 LFPYAADP :::::::: XP_005 LFPYAADP >>NP_002995 (OMIM: 602602) secreted and transmembrane pr (248 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 1931.9 bits: 364.9 E(85289): 7.2e-101 Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP 190 200 210 220 230 240 pF1KE3 LFPYAADP :::::::: NP_002 LFPYAADP >>XP_011521890 (OMIM: 602602) PREDICTED: secreted and tr (248 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 1931.9 bits: 364.9 E(85289): 7.2e-101 Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP 190 200 210 220 230 240 pF1KE3 LFPYAADP :::::::: XP_011 LFPYAADP 248 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:11:32 2016 done: Sun Nov 6 03:11:33 2016 Total Scan time: 6.700 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]