FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3084, 248 aa 1>>>pF1KE3084 248 - 248 aa - 248 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1909+/-0.000717; mu= 16.0833+/- 0.043 mean_var=76.8393+/-15.246, 0's: 0 Z-trim(110.6): 20 B-trim: 57 in 1/49 Lambda= 0.146313 statistics sampled from 11723 (11726) to 11723 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.36), width: 16 Scan time: 2.330 The best scores are: opt bits E(32554) CCDS11808.1 SECTM1 gene_id:6398|Hs108|chr17 ( 248) 1697 367.0 6.7e-102 >>CCDS11808.1 SECTM1 gene_id:6398|Hs108|chr17 (248 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 1942.9 bits: 367.0 E(32554): 6.7e-102 Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP 190 200 210 220 230 240 pF1KE3 LFPYAADP :::::::: CCDS11 LFPYAADP 248 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:11:31 2016 done: Sun Nov 6 03:11:31 2016 Total Scan time: 2.330 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]