FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5269, 198 aa
  1>>>pF1KE5269 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1822+/-0.000709; mu= 14.6947+/- 0.043
 mean_var=69.1596+/-13.871, 0's: 0 Z-trim(110.3): 11  B-trim: 286 in 1/49
 Lambda= 0.154223
 statistics sampled from 11474 (11478) to 11474 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.353), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS11785.1 MRPL12 gene_id:6182|Hs108|chr17        ( 198) 1266 289.9 6.8e-79


>>CCDS11785.1 MRPL12 gene_id:6182|Hs108|chr17             (198 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1529.8  bits: 289.9 E(32554): 6.8e-79
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE5 MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAE
              130       140       150       160       170       180

              190        
pF1KE5 AEKIKAALEAVGGTVVLE
       ::::::::::::::::::
CCDS11 AEKIKAALEAVGGTVVLE
              190        




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:18:00 2016 done: Mon Nov  7 23:18:00 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]