FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6627, 220 aa 1>>>pF1KE6627 220 - 220 aa - 220 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5527+/-0.000735; mu= 11.9059+/- 0.044 mean_var=61.6740+/-11.939, 0's: 0 Z-trim(108.5): 7 B-trim: 0 in 0/50 Lambda= 0.163314 statistics sampled from 10276 (10282) to 10276 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.316), width: 16 Scan time: 1.340 The best scores are: opt bits E(32554) CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 1538 370.6 4.4e-103 CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 780 192.0 2.6e-49 CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 686 169.8 1.1e-42 CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 554 138.7 2.6e-33 >>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa) initn: 1538 init1: 1538 opt: 1538 Z-score: 1964.1 bits: 370.6 E(32554): 4.4e-103 Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE6 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IYGNPIKRIQYEIKQIKMFKGPEKDIEFIYTAPSSAVCGVSLDVGGKKEYLIAGKAEGDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IYGNPIKRIQYEIKQIKMFKGPEKDIEFIYTAPSSAVCGVSLDVGGKKEYLIAGKAEGDG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 KMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWVTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWVTE 130 140 150 160 170 180 190 200 210 220 pF1KE6 KNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP :::::::::::::::::::::::::::::::::::::::: CCDS11 KNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP 190 200 210 220 >>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa) initn: 812 init1: 564 opt: 780 Z-score: 998.8 bits: 192.0 E(32554): 2.6e-49 Smith-Waterman score: 780; 50.0% identity (80.2% similar) in 212 aa overlap (14-220:14-224) 10 20 30 40 50 pF1KE6 MGAAARTLRLALGLLLLATLLRP---ADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDS :: : .:::: ..::::.:.:::: .:.. .::::: ::: : . CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 GNDIYGNPIKRIQYEIKQIKMFKGPEK--DIEFIYTAPSSAVCGVSLDVGGKKEYLIAGK . : .. : ..::::::::::: :: :...::: .:..:::.:.....:.::..:. CCDS26 SADP-ADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 AEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWM . .:::. : ::..: ::. :: .:..::::.:...: :.:: : .:: ::.:.:::: CCDS26 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT 120 130 140 150 160 170 180 190 200 210 220 pF1KE6 DWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP ::. :... :.::. ..:.:. ::.:.:::: : ..::.:: .: CCDS26 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP 180 190 200 210 220 >>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa) initn: 616 init1: 456 opt: 686 Z-score: 879.5 bits: 169.8 E(32554): 1.1e-42 Smith-Waterman score: 686; 45.2% identity (75.4% similar) in 199 aa overlap (24-220:21-211) 10 20 30 40 50 60 pF1KE6 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND :.::.::: :::.::::.:.:::::.:..: : : CCDS13 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEG-- 10 20 30 40 50 70 80 90 100 110 pF1KE6 IYGNPIKRIQYEIKQIKMFKGPEK--DIEFIYTAPSSAVCGVSLDVGGKKEYLIAGKAEG :. . : :::.::..: : ...:.: : ..::..:.:. : .::..:.. CCDS13 ----PFGTLVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVN-KYQYLLTGRVY- 60 70 80 90 100 120 130 140 150 160 170 pF1KE6 DGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWV ::::. ::.:. :: :. .:.:.::.::..::.::: : ..::...: .:::: : . CCDS13 DGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWTDML 110 120 130 140 150 160 180 190 200 210 220 pF1KE6 TEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP .. . :.:.: .:::... : :.:::: ::: . ... :: CCDS13 SNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP 170 180 190 200 210 >>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa) initn: 547 init1: 199 opt: 554 Z-score: 711.6 bits: 138.7 E(32554): 2.6e-33 Smith-Waterman score: 554; 42.3% identity (67.2% similar) in 201 aa overlap (10-203:7-199) 10 20 30 40 50 60 pF1KE6 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND :: :.::: :. :. ::.: : ::: ::::.:.::::: :. ::.. . CCDS14 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQ-TT 10 20 30 40 50 70 80 90 100 110 pF1KE6 IYGNPIKRIQYEIKQIKMFKGPEK-----DIEFIYTAPSSAVCGVSLDVGGK-KEYLIAG .: .::::. ::.:: . ::.:.:: .::: .. .:.:::: CCDS14 LYQ------RYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 KAEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCE-CKITRCPMIPCYISSPDECL : . :: .::: :.:..::..:: .:...... : .::: : . : ::: ..: .:: CCDS14 KLQ-DGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCL 120 130 140 150 160 180 190 200 210 220 pF1KE6 WMDWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP : : . . . .: :.. .::. : : :.: CCDS14 WTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA 170 180 190 200 220 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:55:04 2016 done: Tue Nov 8 14:55:04 2016 Total Scan time: 1.340 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]