FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6274, 190 aa 1>>>pF1KE6274 190 - 190 aa - 190 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9425+/-0.000284; mu= 15.1097+/- 0.018 mean_var=59.1206+/-11.912, 0's: 0 Z-trim(117.7): 21 B-trim: 0 in 0/55 Lambda= 0.166803 statistics sampled from 29888 (29909) to 29888 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.351), width: 16 Scan time: 4.380 The best scores are: opt bits E(85289) NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 1253 309.1 2.7e-84 XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 1180 291.6 5.5e-79 XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin ( 137) 756 189.5 2.1e-48 NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 253 68.4 6e-12 NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 251 68.0 8.7e-12 NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 251 68.0 8.7e-12 NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 251 68.0 8.7e-12 XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 251 68.0 8.7e-12 NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 245 66.5 2.3e-11 NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 243 66.0 3.2e-11 XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin ( 142) 186 52.3 4.2e-07 NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142) 186 52.3 4.2e-07 XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin ( 154) 186 52.3 4.5e-07 NP_067080 (OMIM: 605304) neuroglobin [Homo sapiens ( 151) 151 43.9 0.00015 NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142) 141 41.5 0.00076 NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142) 141 41.5 0.00076 NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142) 139 41.0 0.0011 >>NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] (190 aa) initn: 1253 init1: 1253 opt: 1253 Z-score: 1634.4 bits: 309.1 E(85289): 2.7e-84 Smith-Waterman score: 1253; 99.5% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: NP_599 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_599 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_599 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT 130 140 150 160 170 180 190 pF1KE6 PPATLPSSGP :::::::::: NP_599 PPATLPSSGP 190 >>XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin isof (202 aa) initn: 1180 init1: 1180 opt: 1180 Z-score: 1539.1 bits: 291.6 E(85289): 5.5e-79 Smith-Waterman score: 1180; 99.4% identity (100.0% similar) in 180 aa overlap (1-180:1-180) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: XP_005 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT 130 140 150 160 170 180 190 pF1KE6 PPATLPSSGP XP_005 HSSWRRSPEGSWGRQASCPSCC 190 200 >>XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin isof (137 aa) initn: 756 init1: 756 opt: 756 Z-score: 990.1 bits: 189.5 E(85289): 2.1e-48 Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 115 aa overlap (66-180:1-115) 40 50 60 70 80 90 pF1KE6 ASCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVEN :::::::::::::::::::::::::::::: XP_016 MEDPLEMERSPQLRKHACRVMGALNTVVEN 10 20 30 100 110 120 130 140 150 pF1KE6 LHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLR 40 50 60 70 80 90 160 170 180 190 pF1KE6 GLIYSHVTAAYKEVGWVQQVPNATTPPATLPSSGP ::::::::::::::::::::::::: XP_016 GLIYSHVTAAYKEVGWVQQVPNATTHSSWRRSPEGSWGRQASCPSCC 100 110 120 130 >>NP_005321 (OMIM: 142100) hemoglobin subunit epsilon [H (147 aa) initn: 116 init1: 102 opt: 253 Z-score: 335.5 bits: 68.4 E(85289): 6e-12 Smith-Waterman score: 253; 27.2% identity (71.3% similar) in 136 aa overlap (19-154:4-134) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF .. :. :: ..:... . :..: : :..: .: ....: NP_005 MVHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..: .. .: . .:... :. .:. ... ...:. :... ..: ... : : .:. NP_005 DSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNM---DNLKPAFAKLSELHCDKLHVD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT : ::.:..:.. ..: .:...: ::.: :: :: NP_005 PENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH 110 120 130 140 190 pF1KE6 PPATLPSSGP >>NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa) initn: 238 init1: 126 opt: 251 Z-score: 332.6 bits: 68.0 E(85289): 8.7e-12 Smith-Waterman score: 251; 29.4% identity (63.4% similar) in 153 aa overlap (19-171:3-152) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::..: . : .:... :. : .:.:.: . : . . : NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..:::... ::. : .:.::. :. ::. .... . . :: ..:: :::. NP_976 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIP 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :....: :..:. . .:: ..: : : :. . ... :::.:. NP_976 VKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG 110 120 130 140 150 190 pF1KE6 PPATLPSSGP >>NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa) initn: 238 init1: 126 opt: 251 Z-score: 332.6 bits: 68.0 E(85289): 8.7e-12 Smith-Waterman score: 251; 29.4% identity (63.4% similar) in 153 aa overlap (19-171:3-152) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::..: . : .:... :. : .:.:.: . : . . : NP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..:::... ::. : .:.::. :. ::. .... . . :: ..:: :::. NP_005 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIP 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :....: :..:. . .:: ..: : : :. . ... :::.:. NP_005 VKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG 110 120 130 140 150 190 pF1KE6 PPATLPSSGP >>NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa) initn: 238 init1: 126 opt: 251 Z-score: 332.6 bits: 68.0 E(85289): 8.7e-12 Smith-Waterman score: 251; 29.4% identity (63.4% similar) in 153 aa overlap (19-171:3-152) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::..: . : .:... :. : .:.:.: . : . . : NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..:::... ::. : .:.::. :. ::. .... . . :: ..:: :::. NP_976 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIP 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :....: :..:. . .:: ..: : : :. . ... :::.:. NP_976 VKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG 110 120 130 140 150 190 pF1KE6 PPATLPSSGP >>XP_005261662 (OMIM: 160000) PREDICTED: myoglobin isofo (154 aa) initn: 238 init1: 126 opt: 251 Z-score: 332.6 bits: 68.0 E(85289): 8.7e-12 Smith-Waterman score: 251; 29.4% identity (63.4% similar) in 153 aa overlap (19-171:3-152) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ::..: . : .:... :. : .:.:.: . : . . : XP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..:::... ::. : .:.::. :. ::. .... . . :: ..:: :::. XP_005 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIP 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT :....: :..:. . .:: ..: : : :. . ... :::.:. XP_005 VKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG 110 120 130 140 150 190 pF1KE6 PPATLPSSGP >>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa) initn: 111 init1: 97 opt: 245 Z-score: 325.1 bits: 66.5 E(85289): 2.3e-11 Smith-Waterman score: 245; 25.0% identity (69.6% similar) in 148 aa overlap (19-166:4-146) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ..: .. .. ..:... . ::.: : :..: .: ....: NP_000 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..: .. . . .:... :. .:. .:. ....: : .....: ... : : .:. NP_000 DSFGNLSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDD---LKGTFAQLSELHCDKLHVD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT : ::.:..:.. :.: .:...: ::.: .: :. . : ... : NP_000 PENFKLLGNVLVTVLAIHFGKEFTPEVQASWQKMVTGVASALSSRYH 110 120 130 140 190 pF1KE6 PPATLPSSGP >>NP_000550 (OMIM: 141749,142200) hemoglobin subunit gam (147 aa) initn: 118 init1: 97 opt: 243 Z-score: 322.5 bits: 66.0 E(85289): 3.2e-11 Smith-Waterman score: 243; 25.0% identity (69.6% similar) in 148 aa overlap (19-166:4-146) 10 20 30 40 50 60 pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF ..: .. .. ..:... . ::.: : :..: .: ....: NP_000 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFF 10 20 30 40 70 80 90 100 110 120 pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE ..: .. . . .:... :. .:. .:. ....: : .....: ... : : .:. NP_000 DSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDD---LKGTFAQLSELHCDKLHVD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT : ::.:..:.. :.: .:...: ::.: .: :. . : ... : NP_000 PENFKLLGNVLVTVLAIHFGKEFTPEVQASWQKMVTAVASALSSRYH 110 120 130 140 190 pF1KE6 PPATLPSSGP 190 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:41:29 2016 done: Tue Nov 8 11:41:30 2016 Total Scan time: 4.380 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]