FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4126, 517 aa
  1>>>pF1KE4126 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8502+/-0.000829; mu= 14.6547+/- 0.050
 mean_var=197.2072+/-42.488, 0's: 0 Z-trim(115.2): 122  B-trim: 637 in 1/50
 Lambda= 0.091330
 statistics sampled from 15595 (15743) to 15595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.484), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS11732.1 TRIM65 gene_id:201292|Hs108|chr17      ( 517) 3662 494.8 9.5e-140


>>CCDS11732.1 TRIM65 gene_id:201292|Hs108|chr17           (517 aa)
 initn: 3662 init1: 3662 opt: 3662  Z-score: 2622.4  bits: 494.8 E(32554): 9.5e-140
Smith-Waterman score: 3662; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KE4 MAAQLLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAQLLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RRNVALSGVLEVVRAGPARDPGPDPGPGPDPAARCPRHGRPLELFCRTEGRCVCSVCTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRNVALSGVLEVVRAGPARDPGPDPGPGPDPAARCPRHGRPLELFCRTEGRCVCSVCTVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ECRLHERALLDAERLKREAQLRASLEVTQQQATQAEGQLLELRKQSSQIQNSACILASWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ECRLHERALLDAERLKREAQLRASLEVTQQQATQAEGQLLELRKQSSQIQNSACILASWV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SGKFSSLLQALEIQHTTALRSIEVAKTQALAQARDEEQRLRVHLEAVARHGCRIRELLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGKFSSLLQALEIQHTTALRSIEVAKTQALAQARDEEQRLRVHLEAVARHGCRIRELLEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VDEQTFLQESQLLQPPGPLGPLTPLQWDEDQQLGDLKQLLSRLCGLLLEEGSHPGAPAKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDEQTFLQESQLLQPPGPLGPLTPLQWDEDQQLGDLKQLLSRLCGLLLEEGSHPGAPAKP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VDLAPVEAPGPLAPVPSTVCPLRRKLWQNYRNLTFDPVSANRHFYLSRQDQQVKHCRQSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDLAPVEAPGPLAPVPSTVCPLRRKLWQNYRNLTFDPVSANRHFYLSRQDQQVKHCRQSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 GPGGPGSFELWQVQCAQSFQAGHHYWEVRASDHSVTLGVSYPQLPRCRLGPHTDNIGRGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPGGPGSFELWQVQCAQSFQAGHHYWEVRASDHSVTLGVSYPQLPRCRLGPHTDNIGRGP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 CSWGLCVQEDSLQAWHNGEAQRLPGVSGRLLGMDLDLASGCLTFYSLEPQTQPLYTFHAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CSWGLCVQEDSLQAWHNGEAQRLPGVSGRLLGMDLDLASGCLTFYSLEPQTQPLYTFHAL
              430       440       450       460       470       480

              490       500       510       
pF1KE4 FNQPLTPVFWLLEGRTLTLCHQPGAVFPLGPQEEVLS
       :::::::::::::::::::::::::::::::::::::
CCDS11 FNQPLTPVFWLLEGRTLTLCHQPGAVFPLGPQEEVLS
              490       500       510       




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:38:32 2016 done: Sun Nov  6 03:38:33 2016
 Total Scan time:  3.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]