Result of FASTA (omim) for
pFN21AE6685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6685, 229 aa
1>>>pF1KE6685 229 - 229 aa - 229 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0514+/-0.000362; mu= 15.7232+/- 0.022
mean_var=68.1848+/-13.494, 0's: 0 Z-trim(113.9): 79 B-trim: 721 in 2/51
Lambda= 0.155321
statistics sampled from 23327 (23405) to 23327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.274), width: 16
Scan time: 4.710
The best scores are: opt bits E(85289)
NP_000617 (OMIM: 147245,612692) B-cell antigen rec ( 229) 1537 353.1 2.3e-97
NP_001035022 (OMIM: 147245,612692) B-cell antigen ( 230) 1525 350.4 1.5e-96
NP_067613 (OMIM: 147245,612692) B-cell antigen rec ( 125) 552 132.2 3.9e-31
NP_001315979 (OMIM: 147245,612692) B-cell antigen ( 126) 552 132.2 3.9e-31
NP_001774 (OMIM: 112205,613501) B-cell antigen rec ( 226) 158 44.1 0.00023
>>NP_000617 (OMIM: 147245,612692) B-cell antigen recepto (229 aa)
initn: 1537 init1: 1537 opt: 1537 Z-score: 1869.2 bits: 353.1 E(85289): 2.3e-97
Smith-Waterman score: 1537; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KE6 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
130 140 150 160 170 180
190 200 210 220
pF1KE6 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
190 200 210 220
>>NP_001035022 (OMIM: 147245,612692) B-cell antigen rece (230 aa)
initn: 1414 init1: 1414 opt: 1525 Z-score: 1854.6 bits: 350.4 E(85289): 1.5e-96
Smith-Waterman score: 1525; 99.6% identity (99.6% similar) in 230 aa overlap (1-229:1-230)
10 20 30 40 50
pF1KE6 MARLALSPVPSHWMVALLLLLSA-EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_001 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
130 140 150 160 170 180
180 190 200 210 220
pF1KE6 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
190 200 210 220 230
>>NP_067613 (OMIM: 147245,612692) B-cell antigen recepto (125 aa)
initn: 552 init1: 552 opt: 552 Z-score: 680.0 bits: 132.2 E(85289): 3.9e-31
Smith-Waterman score: 592; 54.6% identity (54.6% similar) in 229 aa overlap (1-229:1-125)
10 20 30 40 50 60
pF1KE6 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
::::::::::::::::::::::::::::::::::::::::
NP_067 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKG--------------------
10 20 30 40
70 80 90 100 110 120
pF1KE6 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
NP_067 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE6 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
::::::::::::::::::::::::::::::::::::
NP_067 ------------------------FSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
50 60 70
190 200 210 220
pF1KE6 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
80 90 100 110 120
>>NP_001315979 (OMIM: 147245,612692) B-cell antigen rece (126 aa)
initn: 684 init1: 552 opt: 552 Z-score: 679.9 bits: 132.2 E(85289): 3.9e-31
Smith-Waterman score: 580; 54.3% identity (54.3% similar) in 230 aa overlap (1-229:1-126)
10 20 30 40 50
pF1KE6 MARLALSPVPSHWMVALLLLLSA-EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
::::::::::::::::::::::: :::::::::::::::::
NP_001 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKG-------------------
10 20 30 40
60 70 80 90 100 110
pF1KE6 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
NP_001 ------------------------------------------------------------
120 130 140 150 160 170
pF1KE6 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
:::::::::::::::::::::::::::::::::::
NP_001 -------------------------FSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
50 60 70
180 190 200 210 220
pF1KE6 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
80 90 100 110 120
>>NP_001774 (OMIM: 112205,613501) B-cell antigen recepto (226 aa)
initn: 237 init1: 75 opt: 158 Z-score: 199.2 bits: 44.1 E(85289): 0.00023
Smith-Waterman score: 208; 29.7% identity (55.7% similar) in 185 aa overlap (40-210:27-202)
10 20 30 40 50 60
pF1KE6 PSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIW--QSPRFIARKRGFTVKMHCYM
: .:. .: . : . . : ....:
NP_001 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPH
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NSASG-NVSWLWKQEMDEN--PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ
::... ::.: :. . : .. : : :. : .:: ::.. .::: :.
NP_001 NSSNNANVTW-WRVLHGNYTWPPEF-LGPG---EDPN---GTLIIQNVNKSHGGIYVCRV
60 70 80 90 100
130 140 150 160 170 180
pF1KE6 KCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDK-
. .: : :.::: ::: : . . :. :: . ..... .:: ::: .
NP_001 QEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRK
110 120 130 140 150 160
190 200 210 220
pF1KE6 --DDSKAGM------EEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
.. : :. :... ::::..:. . ::::
NP_001 RWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
170 180 190 200 210 220
229 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:24:17 2016 done: Tue Nov 8 15:24:18 2016
Total Scan time: 4.710 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]