FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4083, 435 aa 1>>>pF1KE4083 435 - 435 aa - 435 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6885+/-0.000417; mu= 11.8821+/- 0.026 mean_var=165.8710+/-36.503, 0's: 0 Z-trim(115.9): 141 B-trim: 1622 in 1/51 Lambda= 0.099584 statistics sampled from 26553 (26754) to 26553 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.314), width: 16 Scan time: 8.060 The best scores are: opt bits E(85289) NP_057209 (OMIM: 615172) RING finger and transmemb ( 435) 2981 440.8 3.3e-123 NP_002608 (OMIM: 602859,614870,614871) peroxisome ( 326) 195 40.4 0.0085 >>NP_057209 (OMIM: 615172) RING finger and transmembrane (435 aa) initn: 2981 init1: 2981 opt: 2981 Z-score: 2332.9 bits: 440.8 E(85289): 3.3e-123 Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435) 10 20 30 40 50 60 pF1KE4 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI 370 380 390 400 410 420 430 pF1KE4 NKWKDGATSSHLQIY ::::::::::::::: NP_057 NKWKDGATSSHLQIY 430 >>NP_002608 (OMIM: 602859,614870,614871) peroxisome biog (326 aa) initn: 147 init1: 125 opt: 195 Z-score: 171.2 bits: 40.4 E(85289): 0.0085 Smith-Waterman score: 199; 28.7% identity (53.7% similar) in 164 aa overlap (256-413:165-311) 230 240 250 260 270 280 pF1KE4 QSLYYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYW :.:. .:: :: : . : .: . NP_002 GRGCSGARRWMRHHTATLTEQQRRALLRAVFVLR---QGLACLQRL---HVAWFYIHGVF 140 150 160 170 180 290 300 310 320 330 340 pF1KE4 YMLLEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKL-LEFFGHLR : : ..: :.. . : : . . :. ::.. .::.:.:.. :...: NP_002 YHLAKRLTGI--TYLRV----RSLPGEDLRARVSYRLLGVI-SLLHLVLSMGLQLYG--- 190 200 210 220 230 350 360 370 380 390 pF1KE4 TFRQVLRI-----FFTQPSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECM ::: : . :. :. ... . . .:..: : ..: : :.:: ::. NP_002 -FRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECI 240 250 260 270 280 290 400 410 420 430 pF1KE4 TLWFNREKTCPLCRTVISDHINKWKDGATSSHLQIY : : . . ::::: NP_002 TAWCSSKAECPLCREKFPPQKLIYLRHYR 300 310 320 435 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:58:16 2016 done: Sun Nov 6 03:58:17 2016 Total Scan time: 8.060 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]