FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4083, 435 aa
  1>>>pF1KE4083 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8853+/-0.00101; mu= 10.5230+/- 0.060
 mean_var=150.5295+/-32.336, 0's: 0 Z-trim(108.9): 106  B-trim: 0 in 0/48
 Lambda= 0.104535
 statistics sampled from 10447 (10553) to 10447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.324), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS11622.2 RNFT1 gene_id:51136|Hs108|chr17        ( 435) 2981 461.7 6.5e-130
CCDS44987.1 RNFT2 gene_id:84900|Hs108|chr12        ( 444) 1087 176.0 6.4e-44
CCDS9180.2 RNFT2 gene_id:84900|Hs108|chr12         ( 420)  844 139.4 6.6e-33


>>CCDS11622.2 RNFT1 gene_id:51136|Hs108|chr17             (435 aa)
 initn: 2981 init1: 2981 opt: 2981  Z-score: 2445.8  bits: 461.7 E(32554): 6.5e-130
Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KE4 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI
              370       380       390       400       410       420

              430     
pF1KE4 NKWKDGATSSHLQIY
       :::::::::::::::
CCDS11 NKWKDGATSSHLQIY
              430     

>>CCDS44987.1 RNFT2 gene_id:84900|Hs108|chr12             (444 aa)
 initn: 1092 init1: 595 opt: 1087  Z-score: 902.0  bits: 176.0 E(32554): 6.4e-44
Smith-Waterman score: 1087; 39.8% identity (71.9% similar) in 420 aa overlap (20-435:28-444)

                       10        20        30        40        50  
pF1KE4         MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTG
                                  :.: .: .: .      .... ...  :::.  
CCDS44 MWLFTVNQVLRKMQRRHSSNTDNIPPERNRSQALSSEASVDEGGVFESLKAEAASPPALF
               10        20        30        40        50        60

             60        70        80        90         100       110
pF1KE4 SSEDASTPQCVHTRLTGEGSCPHSGDVHIQINSIPKECAE--NASSRNIRSGVHSCAHGC
       :. ..: :          ::   .::: ::. .  .: .   .... . :.  :   :: 
CCDS44 SGLSGSLPTSSFPSSLVLGSSAGGGDVFIQMPASREEGGGRGEGGAYHHRQPHHHFHHGG
               70        80        90       100       110       120

               120        130       140       150       160        
pF1KE4 VHS-RLRGHSHSEAR-LTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQ
        ..  :  :  .. :  ... . :.    . ..::.. .. ::::.::.:::: .:: .:
CCDS44 HRGGSLLQHVGGDHRGHSEEGGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCFQ
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KE4 HITGISLGIGLLTTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSL
       :  ::.. ::. .:: :::... .:: :.:. : .   :.:.::::... . ::: ::.:
CCDS44 HKLGIAVCIGMASTFAYANSTLREQVSLKEKRSVLVILWILAFLAGNTLYVLYTFSSQQL
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KE4 YYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYML
       : :::::.:.:. :.:....:::::.::.::.. ..:::::. .:..:.  :::: .:..
CCDS44 YNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCLIVALPKIILAVKSKGKFYLV
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KE4 LEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQ
       .::: : .:..::: .:..:..  :.  . . . :: .: .:: . : ... :..   :.
CCDS44 IEELSQLFRSLVPIQLWYKYIM--GD-DSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRK
              310       320          330       340       350       

      350       360       370       380       390       400        
pF1KE4 VLRIFFTQPSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKT
       .:... :. .::: :. .::... :::.::::::..:..:.:::.:::::. ::..::.:
CCDS44 ALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERT
       360       370       380       390       400       410       

      410       420       430     
pF1KE4 CPLCRTVISDHINKWKDGATSSHLQIY
       :::::.:  : .  :::::::.:.:.:
CCDS44 CPLCRSVAVDTLRCWKDGATSAHFQVY
       420       430       440    

>>CCDS9180.2 RNFT2 gene_id:84900|Hs108|chr12              (420 aa)
 initn: 849 init1: 595 opt: 844  Z-score: 704.2  bits: 139.4 E(32554): 6.6e-33
Smith-Waterman score: 844; 36.8% identity (70.0% similar) in 380 aa overlap (20-394:28-403)

                       10        20        30        40        50  
pF1KE4         MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTG
                                  :.: .: .: .      .... ...  :::.  
CCDS91 MWLFTVNQVLRKMQRRHSSNTDNIPPERNRSQALSSEASVDEGGVFESLKAEAASPPALF
               10        20        30        40        50        60

             60        70        80        90         100       110
pF1KE4 SSEDASTPQCVHTRLTGEGSCPHSGDVHIQINSIPKECAE--NASSRNIRSGVHSCAHGC
       :. ..: :          ::   .::: ::. .  .: .   .... . :.  :   :: 
CCDS91 SGLSGSLPTSSFPSSLVLGSSAGGGDVFIQMPASREEGGGRGEGGAYHHRQPHHHFHHGG
               70        80        90       100       110       120

                120        130       140       150       160       
pF1KE4 VH--SRLRGHSHSEAR-LTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVM
        :  . :  :  .. :  ... . :.    . ..::.. .. ::::.::.:::: .:: .
CCDS91 -HRGGSLLQHVGGDHRGHSEEGGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCF
               130       140       150       160       170         

       170       180       190       200       210       220       
pF1KE4 QHITGISLGIGLLTTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQS
       ::  ::.. ::. .:: :::... .:: :.:. : .   :.:.::::... . ::: ::.
CCDS91 QHKLGIAVCIGMASTFAYANSTLREQVSLKEKRSVLVILWILAFLAGNTLYVLYTFSSQQ
     180       190       200       210       220       230         

       230       240       250       260       270       280       
pF1KE4 LYYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYM
       :: :::::.:.:. :.:....:::::.::.::.. ..:::::. .:..:.  :::: .:.
CCDS91 LYNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCLIVALPKIILAVKSKGKFYL
     240       250       260       270       280       290         

       290       300       310       320       330       340       
pF1KE4 LLEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFR
       ..::: : .:..::: .:..:..  :.  . . . :: .: .:: . : ... :..   :
CCDS91 VIEELSQLFRSLVPIQLWYKYIM--GD-DSSNSYFLGGVLIVLYSLCKSFDICGRVGGVR
     300       310       320          330       340       350      

       350       360       370       380       390       400       
pF1KE4 QVLRIFFTQPSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREK
       ..:... :. .::: :. .::... :::.::::::..:..:.:: ..             
CCDS91 KALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQMLLKGHKKLELEKIDE
        360       370       380       390       400       410      

       410       420       430     
pF1KE4 TCPLCRTVISDHINKWKDGATSSHLQIY
                                   
CCDS91 SAGV                        
        420                        




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:58:15 2016 done: Sun Nov  6 03:58:16 2016
 Total Scan time:  2.900 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]