FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6458, 452 aa 1>>>pF1KE6458 452 - 452 aa - 452 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8303+/-0.000899; mu= 14.0547+/- 0.054 mean_var=63.1937+/-12.873, 0's: 0 Z-trim(105.3): 18 B-trim: 0 in 0/51 Lambda= 0.161338 statistics sampled from 8364 (8369) to 8364 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.257), width: 16 Scan time: 2.330 The best scores are: opt bits E(32554) CCDS11593.1 SCPEP1 gene_id:59342|Hs108|chr17 ( 452) 3040 716.5 1.4e-206 CCDS5419.1 CPVL gene_id:54504|Hs108|chr7 ( 476) 440 111.3 2.2e-24 >>CCDS11593.1 SCPEP1 gene_id:59342|Hs108|chr17 (452 aa) initn: 3040 init1: 3040 opt: 3040 Z-score: 3822.2 bits: 716.5 E(32554): 1.4e-206 Smith-Waterman score: 3040; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452) 10 20 30 40 50 60 pF1KE6 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN 370 380 390 400 410 420 430 440 450 pF1KE6 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE :::::::::::::::::::::::::::::::: CCDS11 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE 430 440 450 >>CCDS5419.1 CPVL gene_id:54504|Hs108|chr7 (476 aa) initn: 475 init1: 300 opt: 440 Z-score: 551.2 bits: 111.3 E(32554): 2.2e-24 Smith-Waterman score: 524; 27.5% identity (57.7% similar) in 433 aa overlap (22-445:57-462) 10 20 30 40 pF1KE6 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRK--DA : . . : .: . : ..:: : .. CCDS54 LYRSVSMPPKGDSGQPLFLTPYIEAGKIQKGRELSLVGPFPGLNMKSYAGFLTVNKTYNS 30 40 50 60 70 80 50 60 70 80 90 100 pF1KE6 YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL----DSDLKPRKTTW .:.:.. : . .. :.:.:::::::::: :: : : :: . :. : : CCDS54 NLFFWFFPAQIQPED---APVVLWLQGGPGGSSM-FGLFVEHGPYVVTSNMTLRDRDFPW 90 100 110 120 130 140 110 120 130 140 150 160 pF1KE6 LQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFS . :.:..:::::::::... . .:: . :: :.. : ::. :... ::. . CCDS54 TTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPEYKNNDFYVTG 150 160 170 180 190 200 170 180 190 200 210 220 pF1KE6 ESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDK :::.::.. .:. ... .: :. :.:.::.. .: . . ... .::...::..: CCDS54 ESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEFLYQIGLLDEK 210 220 230 240 250 260 230 240 250 260 270 280 pF1KE6 GLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESS .: .. .. . : . :: :. : . . ..: : :. : :.. . CCDS54 QKKYFQKQCHECIEHIRKQNWFEAFEILDKL-LDGDLTSDPSYFQNV----TGCSNYYNF 270 280 290 300 310 290 300 310 320 330 340 pF1KE6 LEFTQSHLVCLCQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDF :. :. . .. ... .: . .:. ... .:... ..: : ..:: CCDS54 LRCTEP------EDQLYYVKFLSLPE-----VRQAIHV--GNQTFN-DGTIVEKYLREDT 320 330 340 350 360 350 360 370 380 390 400 pF1KE6 MKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWP---ELPKFSQLKWKAL .. : . :... . .: .::::::.:: . : . . : : : . :: . CCDS54 VQSVKPWLTEIMN-NYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWKIF 370 380 390 400 410 420 410 420 430 440 450 pF1KE6 YSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMMRLVTQQE :: :....... .. : .::..: :: :. :. CCDS54 KSDS---EVAGYIRQAGDFHQVIIRGGGHILPYDQPLRAFDMINRFIYGKGWDPYVG 430 440 450 460 470 452 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:29:27 2016 done: Tue Nov 8 13:29:27 2016 Total Scan time: 2.330 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]