FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8966, 356 aa 1>>>pF1KB8966 356 - 356 aa - 356 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.1590+/-0.000916; mu= -12.0519+/- 0.056 mean_var=445.2359+/-90.694, 0's: 0 Z-trim(118.4): 111 B-trim: 0 in 0/55 Lambda= 0.060783 statistics sampled from 19239 (19355) to 19239 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.595), width: 16 Scan time: 3.700 The best scores are: opt bits E(32554) CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17 ( 356) 2484 231.2 1.1e-60 CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7 ( 376) 866 89.3 5.8e-18 >>CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17 (356 aa) initn: 2484 init1: 2484 opt: 2484 Z-score: 1203.1 bits: 231.2 E(32554): 1.1e-60 Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356) 10 20 30 40 50 60 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 250 260 270 280 290 300 310 320 330 340 350 pF1KB8 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 310 320 330 340 350 >>CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7 (376 aa) initn: 921 init1: 716 opt: 866 Z-score: 436.0 bits: 89.3 E(32554): 5.8e-18 Smith-Waterman score: 1037; 51.2% identity (67.5% similar) in 381 aa overlap (1-354:1-372) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ ::.::::::::::::::::::::::: : .:::.:::: ::: :::::::.:::. CCDS54 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA ::. : . : . .:: : : : : ::.:::::::.::: .: :. : CCDS54 PGSH--PRHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKK---TALLPAAA 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 ASAVPA-SGVG--SPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRV :.:. : .: . : ..: . ...:::.::::::::::::::::::::::::::::::: CCDS54 AAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 EIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP--- ::::::::::::::::::::::::::::: .: ..: : .::: . . :: CCDS54 EIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLF 180 190 200 210 220 230 230 240 250 260 270 pF1KB8 --AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGAS : : .: : .. . . .:.. ..: . . : ... . . CCDS54 EQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPT 240 250 260 270 280 290 280 290 300 310 320 330 pF1KB8 SPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSP :.: : : . : .: . . : : :.. :..::::::: ..:::: :::::: CCDS54 VPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSP 300 310 320 330 340 350 340 350 pF1KB8 VPFSEEELDFFTSTLCAIDLQFP : .: . :::::.:: .:::: CCDS54 VDISADSLDFFTDTLTTIDLQHLNY 360 370 356 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:47:58 2016 done: Sun Nov 6 13:47:58 2016 Total Scan time: 3.700 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]