Result of FASTA (omim) for
pFN21AE6614
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6614, 242 aa
1>>>pF1KE6614 242 - 242 aa - 242 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3964+/-0.000303; mu= 14.9202+/- 0.019
mean_var=73.1667+/-14.581, 0's: 0 Z-trim(117.7): 13 B-trim: 26 in 2/53
Lambda= 0.149940
statistics sampled from 29934 (29947) to 29934 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.351), width: 16
Scan time: 5.700
The best scores are: opt bits E(85289)
NP_001245324 (OMIM: 614677,614679) coiled-coil dom ( 242) 1596 353.8 1.6e-97
NP_998772 (OMIM: 614677,614679) coiled-coil domain ( 242) 1596 353.8 1.6e-97
NP_001245325 (OMIM: 614677,614679) coiled-coil dom ( 242) 1596 353.8 1.6e-97
NP_001245327 (OMIM: 614677,614679) coiled-coil dom ( 103) 606 139.4 2.3e-33
NP_001245328 (OMIM: 614677,614679) coiled-coil dom ( 104) 598 137.7 7.7e-33
NP_001245326 (OMIM: 614677,614679) coiled-coil dom ( 98) 597 137.4 8.6e-33
>>NP_001245324 (OMIM: 614677,614679) coiled-coil domain- (242 aa)
initn: 1596 init1: 1596 opt: 1596 Z-score: 1871.9 bits: 353.8 E(85289): 1.6e-97
Smith-Waterman score: 1596; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
190 200 210 220 230 240
pF1KE6 VD
::
NP_001 VD
>>NP_998772 (OMIM: 614677,614679) coiled-coil domain-con (242 aa)
initn: 1596 init1: 1596 opt: 1596 Z-score: 1871.9 bits: 353.8 E(85289): 1.6e-97
Smith-Waterman score: 1596; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
190 200 210 220 230 240
pF1KE6 VD
::
NP_998 VD
>>NP_001245325 (OMIM: 614677,614679) coiled-coil domain- (242 aa)
initn: 1596 init1: 1596 opt: 1596 Z-score: 1871.9 bits: 353.8 E(85289): 1.6e-97
Smith-Waterman score: 1596; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
190 200 210 220 230 240
pF1KE6 VD
::
NP_001 VD
>>NP_001245327 (OMIM: 614677,614679) coiled-coil domain- (103 aa)
initn: 606 init1: 606 opt: 606 Z-score: 719.9 bits: 139.4 E(85289): 2.3e-33
Smith-Waterman score: 606; 96.9% identity (99.0% similar) in 96 aa overlap (1-96:1-96)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
:::::::::::::::::::::::::::::::: ..:
NP_001 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPVESPPPARDVC
70 80 90 100
130 140 150 160 170 180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
>>NP_001245328 (OMIM: 614677,614679) coiled-coil domain- (104 aa)
initn: 597 init1: 597 opt: 598 Z-score: 710.5 bits: 137.7 E(85289): 7.7e-33
Smith-Waterman score: 598; 95.9% identity (96.9% similar) in 98 aa overlap (1-96:1-98)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISP--EKAPLQPETSADFYRDWRRHLPSGPE
:::::::::::::::::::::::::::::::: :. :
NP_001 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPVGESPPPARDVC
70 80 90 100
120 130 140 150 160 170
pF1KE6 RYQALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTL
>>NP_001245326 (OMIM: 614677,614679) coiled-coil domain- (98 aa)
initn: 597 init1: 597 opt: 597 Z-score: 709.7 bits: 137.4 E(85289): 8.6e-33
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
::::::::::::::::::::::::::::::::
NP_001 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPNSWKSS
70 80 90
130 140 150 160 170 180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
242 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:47:15 2016 done: Tue Nov 8 14:47:16 2016
Total Scan time: 5.700 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]