FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6614, 242 aa
  1>>>pF1KE6614 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3511+/-0.000684; mu= 15.3345+/- 0.041
 mean_var=72.9220+/-14.536, 0's: 0 Z-trim(111.1): 5  B-trim: 0 in 0/51
 Lambda= 0.150191
 statistics sampled from 12087 (12092) to 12087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.371), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS11490.1 CCDC103 gene_id:388389|Hs108|chr17     ( 242) 1596 354.2 4.4e-98
CCDS58554.1 CCDC103 gene_id:388389|Hs108|chr17     (  98)  597 137.5 3.1e-33


>>CCDS11490.1 CCDC103 gene_id:388389|Hs108|chr17          (242 aa)
 initn: 1596 init1: 1596 opt: 1596  Z-score: 1874.3  bits: 354.2 E(32554): 4.4e-98
Smith-Waterman score: 1596; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLELYQ
              190       200       210       220       230       240

         
pF1KE6 VD
       ::
CCDS11 VD
         

>>CCDS58554.1 CCDC103 gene_id:388389|Hs108|chr17          (98 aa)
 initn: 597 init1: 597 opt: 597  Z-score: 710.1  bits: 137.5 E(32554): 3.1e-33
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KE6 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERY
       ::::::::::::::::::::::::::::::::                            
CCDS58 RKDKMGGKRTVPWNCHTIQGRTFQDVATEISPNSWKSS                      
               70        80        90                              

              130       140       150       160       170       180
pF1KE6 QALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNL




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:47:15 2016 done: Tue Nov  8 14:47:15 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]