FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2016, 593 aa 1>>>pF1KE2016 593 - 593 aa - 593 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7564+/-0.000737; mu= 18.0530+/- 0.045 mean_var=83.9863+/-16.642, 0's: 0 Z-trim(111.0): 10 B-trim: 0 in 0/51 Lambda= 0.139949 statistics sampled from 12036 (12040) to 12036 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.37), width: 16 Scan time: 4.000 The best scores are: opt bits E(32554) CCDS45685.1 COASY gene_id:80347|Hs108|chr17 ( 593) 3902 797.5 0 CCDS11429.1 COASY gene_id:80347|Hs108|chr17 ( 564) 3696 755.8 3.2e-218 CCDS11493.1 DCAKD gene_id:79877|Hs108|chr17 ( 231) 331 76.2 5.2e-14 >>CCDS45685.1 COASY gene_id:80347|Hs108|chr17 (593 aa) initn: 3902 init1: 3902 opt: 3902 Z-score: 4255.7 bits: 797.5 E(32554): 0 Smith-Waterman score: 3902; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593) 10 20 30 40 50 60 pF1KE2 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA 490 500 510 520 530 540 550 560 570 580 590 pF1KE2 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD 550 560 570 580 590 >>CCDS11429.1 COASY gene_id:80347|Hs108|chr17 (564 aa) initn: 3696 init1: 3696 opt: 3696 Z-score: 4031.3 bits: 755.8 E(32554): 3.2e-218 Smith-Waterman score: 3696; 100.0% identity (100.0% similar) in 564 aa overlap (30-593:1-564) 10 20 30 40 50 60 pF1KE2 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR ::::::::::::::::::::::::::::::: CCDS11 MAVFRSGLLVLTTPLASLAPRLASILTSAAR 10 20 30 70 80 90 100 110 120 pF1KE2 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE2 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE2 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE2 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE2 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE2 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE2 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA 460 470 480 490 500 510 550 560 570 580 590 pF1KE2 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD 520 530 540 550 560 >>CCDS11493.1 DCAKD gene_id:79877|Hs108|chr17 (231 aa) initn: 238 init1: 238 opt: 331 Z-score: 365.1 bits: 76.2 E(32554): 5.2e-14 Smith-Waterman score: 331; 32.6% identity (67.4% similar) in 190 aa overlap (387-574:1-189) 360 370 380 390 400 410 pF1KE2 EDKVSSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVID ....:::: .:::::. : .. :: ::: CCDS11 MFLVGLTGGIASGKSSVIQVFQQLGCAVID 10 20 30 420 430 440 450 460 470 pF1KE2 SDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPI : ..... :: ::.. .::.:::..: ..: :::::::. .:.. . ..:. : : CCDS11 VDVMARHVVQPGYPAHRRIVEVFGTEVLLENGDINRKVLGDLIFNQPDRRQLLNAITHPE 40 50 60 70 80 90 480 490 500 510 520 530 pF1KE2 IAKLAREEMDRAVAEGKRVCVIDAAVLLEAG--WQNLVHEVWTAVIPETEAVRRIVERDG : : .: . .: : ..: .:.:. . . : : . .:. . :...:.. CCDS11 IRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQ-LARLMRRNS 100 110 120 130 140 540 550 560 570 580 590 pF1KE2 LSEAAAQSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD :.. :..:...:. . ..... ::.. : .:.::: CCDS11 LNRKDAEARINAQLPLTDKARMARHVLDNSGEWSVTKRQVILLHTELERSLEYLPLRFGV 150 160 170 180 190 200 CCDS11 LTGLAAIASLLYLLTHYLLPYA 210 220 230 593 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:50:32 2016 done: Sun Nov 6 13:50:32 2016 Total Scan time: 4.000 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]