FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5742, 678 aa 1>>>pF1KE5742 678 - 678 aa - 678 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6578+/-0.00103; mu= 18.3699+/- 0.062 mean_var=83.0144+/-16.714, 0's: 0 Z-trim(105.3): 51 B-trim: 65 in 2/48 Lambda= 0.140766 statistics sampled from 8310 (8354) to 8310 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.257), width: 16 Scan time: 3.280 The best scores are: opt bits E(32554) CCDS11416.1 DHX58 gene_id:79132|Hs108|chr17 ( 678) 4517 927.7 0 CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025) 897 192.7 2.3e-48 CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9 ( 925) 436 99.0 3.2e-20 >>CCDS11416.1 DHX58 gene_id:79132|Hs108|chr17 (678 aa) initn: 4517 init1: 4517 opt: 4517 Z-score: 4957.6 bits: 927.7 E(32554): 0 Smith-Waterman score: 4517; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678) 10 20 30 40 50 60 pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 610 620 630 640 650 660 670 pF1KE5 DFDFLQHCAENLSDLSLD :::::::::::::::::: CCDS11 DFDFLQHCAENLSDLSLD 670 >>CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025 aa) initn: 1654 init1: 684 opt: 897 Z-score: 981.9 bits: 192.7 E(32554): 2.3e-48 Smith-Waterman score: 1667; 40.5% identity (68.1% similar) in 703 aa overlap (15-668:320-1019) 10 20 30 40 pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET :::::::: ::::.::::.:.:.:: ::. CCDS22 DSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDK 290 300 310 320 330 340 50 60 70 80 90 pF1KE5 VDGA----KVVVLVNRVHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDL : ::.::::.: :: : .::. .: . : :::: . .: .... :. CCDS22 KKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDI 350 360 370 380 390 400 100 110 120 130 140 150 pF1KE5 LICTAELLQMALTSPE--EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA .: ::..:. .: . : :. :.:. ::::..::::::.:..::: :: .:: ::. CCDS22 IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNN 410 420 430 440 450 460 160 170 180 190 200 pF1KE5 Q---------PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ . ::::.::::::::.:::.: : .:.:.::::::.. : . .. ::. CCDS22 RLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK 470 480 490 500 510 520 210 220 230 240 250 260 pF1KE5 EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA .. :.:::.. . .::: . : ..: .:. . .: .: :::: ::: .... . CCDS22 NQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKK 530 540 550 560 570 580 270 280 290 300 310 320 pF1KE5 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------- :: : ...:: : :::.::.:: :.::.: .:: . :. ::..:. : .. CCDS22 AAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEG 590 600 610 620 630 640 330 340 350 pF1KE5 -----C-----------------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKIL : ..: :..:: . .. : .:: . :: :: :.. . CCDS22 GDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTI 650 660 670 680 690 700 360 370 380 390 400 410 pF1KE5 QRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ ..:.. .. : ::::::.:::::..: :. ... . : ..:. :::::.::. ::: CCDS22 MEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQ 710 720 730 740 750 760 420 430 440 450 460 470 pF1KE5 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS .:.:::.::. : .:::.::.:::::::: .::.:.::::.::::.:::::::::::.: CCDS22 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADES 770 780 790 800 810 820 480 490 500 510 520 530 pF1KE5 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA .:..:: :: ...: .:. : .: .:. ::.: :: :: .::. .. .. .. CCDS22 TYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKT 830 840 850 860 870 880 540 550 560 570 580 590 pF1KE5 AQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVI . .. . . .:: :: : . : :.. .: ::::..:.:.. : . :. .. CCDS22 KRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKAL 890 900 910 920 930 940 600 610 620 630 640 650 pF1KE5 NKVFKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRS--MLLETPQGRIQAKKWSRV .: :.. .: : :. ::..:: .:..:.. :: ::.:. ..... . . : ::: .. CCDS22 QKKCADYQINGEIICK-CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVEL 950 960 970 980 990 1000 660 670 pF1KE5 PFSVPDFDFLQHCAENLSDLSLD :.. :..:. . : CCDS22 PITFPNLDYSECCLFSDED 1010 1020 >>CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9 (925 aa) initn: 820 init1: 180 opt: 436 Z-score: 476.6 bits: 99.0 E(32554): 3.2e-20 Smith-Waterman score: 1072; 32.3% identity (62.2% similar) in 694 aa overlap (4-663:244-919) 10 20 30 pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRA :.:: :. .::..::: :: ::: ::: . CCDS65 QEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV 220 230 240 250 260 270 40 50 60 70 80 pF1KE5 AAYVAKRHLETV-DG--AKVVVLVNRVHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAG . . ..::. .: .::: ..:.. . :. : .... . . :: .:: . . CCDS65 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 280 290 300 310 320 330 90 100 110 120 130 140 pF1KE5 FGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY .... .:..: : ..: : .. :..:.:.. ::::.: :. ::.:: .: CCDS65 VEQIVENNDIIILTPQILVNNL---KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE5 LELKLQRAQ-PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ :. :: .. :::::.::::: :.: :.. : :.... .:::.::. : . .. .:. CCDS65 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE 400 410 420 430 440 450 210 220 230 240 250 pF1KE5 EHSQQPCKQYNLCHRRSQDPFGDLLKKLM-------DQIHDHLE-MPEL-SRKFGTQMYE . .: : . . : .: : .. .:: .: :: . .. .:.:::: :: CCDS65 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 460 470 480 490 500 510 260 270 280 290 300 pF1KE5 QQVVKLSEAAALAGL----QEQRV------YALHLRRYNDALLIHDTVRAVDALAALQDF : .: ...: . . .:.:. :. :::.:::::.: . .: ::: :.:: CCDS65 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 520 530 540 550 560 570 310 320 330 340 350 360 pF1KE5 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--ENPKLEMLEKILQRQFSSSNS . .: . . :. : :... .:: . .. : :::::: : :::... . CCDS65 F--SNVRAAGFDEIEQDLTQRFEEKLQELESV-SRDPSNENPKLEDLCFILQEEYHLNPE 580 590 600 610 620 370 380 390 400 410 420 pF1KE5 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF :.:..:: . .: :.. . :. .. .: : :...:.: :: :. ... : CCDS65 TITILFVKTRALVDALKNWIEGNPKLSF--LKPGILTGRGKTNQNTGMTLPAQKCILDAF 630 640 650 660 670 680 430 440 450 460 470 480 pF1KE5 Q-DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEG . .: :.:.:::::.::.:: .::.:. : . : :.:.:.:::.:: : :. : . CCDS65 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS-KCFLLTSN 690 700 710 720 730 740 490 500 510 520 530 540 pF1KE5 SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ . ...: :: : .:.... .: :.: .. :: .: . . :..:.. CCDS65 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ-------THEKFIRDSQEKP 750 760 770 780 790 550 560 570 580 590 600 pF1KE5 FPV---EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKD :: :. .::: .: . . . .:.: .: :.. .. :.. . ::: : : :.. CCDS65 KPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECF-VSR-PHPKPKQFSS 800 810 820 830 840 850 610 620 630 640 650 pF1KE5 WKPGGVISC--RNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSV .. . : : .::.. ::... ::. ..::.:..:...: .:. .::. : CCDS65 FEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEK 860 870 880 890 900 910 660 670 pF1KE5 PDFDFLQHCAENLSDLSLD :: CCDS65 IPFDPAEMSK 920 678 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:29:57 2016 done: Tue Nov 8 04:29:57 2016 Total Scan time: 3.280 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]