FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6289, 306 aa 1>>>pF1KE6289 306 - 306 aa - 306 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3568+/-0.000289; mu= 16.7553+/- 0.018 mean_var=77.4423+/-15.802, 0's: 0 Z-trim(118.0): 3 B-trim: 0 in 0/54 Lambda= 0.145742 statistics sampled from 30597 (30599) to 30597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.359), width: 16 Scan time: 5.630 The best scores are: opt bits E(85289) NP_115727 (OMIM: 611850) 39S ribosomal protein L45 ( 306) 2093 448.9 5.8e-126 NP_001265208 (OMIM: 611850) 39S ribosomal protein ( 256) 1160 252.7 5.7e-67 >>NP_115727 (OMIM: 611850) 39S ribosomal protein L45, mi (306 aa) initn: 2093 init1: 2093 opt: 2093 Z-score: 2382.5 bits: 448.9 E(85289): 5.8e-126 Smith-Waterman score: 2093; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306) 10 20 30 40 50 60 pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: NP_115 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA 250 260 270 280 290 300 pF1KE6 QKPQLA :::::: NP_115 QKPQLA >>NP_001265208 (OMIM: 611850) 39S ribosomal protein L45, (256 aa) initn: 1194 init1: 1150 opt: 1160 Z-score: 1323.4 bits: 252.7 E(85289): 5.7e-67 Smith-Waterman score: 1637; 83.3% identity (83.3% similar) in 306 aa overlap (1-306:1-256) 10 20 30 40 50 60 pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: NP_001 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFP---------- 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK :::::::::::::::::::: NP_001 ----------------------------------------TLAIYDRFGRLMYGQEDVPK 180 190 250 260 270 280 290 300 pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA 200 210 220 230 240 250 pF1KE6 QKPQLA :::::: NP_001 QKPQLA 306 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:49:37 2016 done: Tue Nov 8 11:49:38 2016 Total Scan time: 5.630 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]