FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6289, 306 aa
  1>>>pF1KE6289 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7621+/-0.00069; mu= 14.2869+/- 0.042
 mean_var=76.1652+/-15.136, 0's: 0 Z-trim(110.5): 9  B-trim: 0 in 0/53
 Lambda= 0.146959
 statistics sampled from 11638 (11640) to 11638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS11326.1 MRPL45 gene_id:84311|Hs108|chr17       ( 306) 2093 452.6 1.8e-127
CCDS74047.1 MRPL45 gene_id:84311|Hs108|chr17       ( 256) 1160 254.7 5.4e-68


>>CCDS11326.1 MRPL45 gene_id:84311|Hs108|chr17            (306 aa)
 initn: 2093 init1: 2093 opt: 2093  Z-score: 2402.1  bits: 452.6 E(32554): 1.8e-127
Smith-Waterman score: 2093; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
              250       260       270       280       290       300

             
pF1KE6 QKPQLA
       ::::::
CCDS11 QKPQLA
             

>>CCDS74047.1 MRPL45 gene_id:84311|Hs108|chr17            (256 aa)
 initn: 1194 init1: 1150 opt: 1160  Z-score: 1334.2  bits: 254.7 E(32554): 5.4e-68
Smith-Waterman score: 1637; 83.3% identity (83.3% similar) in 306 aa overlap (1-306:1-256)

               10        20        30        40        50        60
pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS74 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS74 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFP----------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
                                               ::::::::::::::::::::
CCDS74 ----------------------------------------TLAIYDRFGRLMYGQEDVPK
                                                      180       190

              250       260       270       280       290       300
pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
              200       210       220       230       240       250

             
pF1KE6 QKPQLA
       ::::::
CCDS74 QKPQLA
             




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:49:37 2016 done: Tue Nov  8 11:49:37 2016
 Total Scan time:  1.730 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]